RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	ARI1	P53111	347 aa	Known RBP	4.77	□□□□□ -1.65
UBP6	YFR010W	PRP43	P53131	767 aa	Known RBP	4.77	□□□□□ -1.65
UBP6	YFR010W	CWC24	P53769	259 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	IRC3	Q06683	689 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	GLO4	Q12320	285 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	ANP1	P32629	500 aa		4.76	□□□□□ -1.65
UBP6	YFR010W	RPT1	P33299	467 aa	Known RBP	4.76	□□□□□ -1.65
UBP6	YFR010W	PGM1	P33401	570 aa	Known RBP	4.76	□□□□□ -1.65
UBP6	YFR010W	SAS3	P34218	831 aa		4.76	□□□□□ -1.65
UBP6	YFR010W	APE4	P38821	490 aa		4.76	□□□□□ -1.65
UBP6	YFR010W	LEM3	P42838	414 aa		4.76	□□□□□ -1.65
UBP6	YFR010W	TIM54	P47045	478 aa		4.76	□□□□□ -1.65
UBP6	YFR010W	YNR065C	P53751	1116 aa		4.76	□□□□□ -1.65
UBP6	YFR010W	DSE4	P53753	1117 aa		4.76	□□□□□ -1.65
UBP6	YFR010W	SND1	Q04007	877 aa		4.76	□□□□□ -1.65
UBP6	YFR010W	VIP1	Q06685	1146 aa	Known RBP	4.76	□□□□□ -1.65
UBP6	YFR010W	OXR1	Q08952	273 aa		4.76	□□□□□ -1.65
UBP6	YFR010W	TMA17	Q12513	150 aa		4.76	□□□□□ -1.65
UBP6	YFR010W	ADR1	P07248	1323 aa		4.75	□□□□□ -1.65
UBP6	YFR010W	RNA1	P11745	407 aa	Known RBP	4.75	□□□□□ -1.65
UBP6	YFR010W	THI4	P32318	326 aa		4.75	□□□□□ -1.65
UBP6	YFR010W	APL2	P36000	726 aa	Predicted RBP	4.75	□□□□□ -1.65
UBP6	YFR010W	CHZ1	P40019	153 aa	Predicted RBP	4.75	□□□□□ -1.65
UBP6	YFR010W	NEO1	P40527	1151 aa		4.75	□□□□□ -1.65
UBP6	YFR010W	YNL058C	P53947	316 aa		4.75	□□□□□ -1.65
UBP6	YFR010W	UBX4	P54730	416 aa		4.75	□□□□□ -1.65
UBP6	YFR010W	ALO1	P54783	526 aa	Known RBP	4.75	□□□□□ -1.65
UBP6	YFR010W	CIT1	P00890	479 aa		4.74	□□□□□ -1.65
UBP6	YFR010W	PHO4	P07270	312 aa	Known RBP	4.74	□□□□□ -1.65
UBP6	YFR010W	SPS1	P08458	490 aa		4.74	□□□□□ -1.65
UBP6	YFR010W	PGI1	P12709	554 aa	Known RBP	4.74	□□□□□ -1.65
UBP6	YFR010W	YEF3	P16521	1044 aa	Known RBP	4.74	□□□□□ -1.65
UBP6	YFR010W	MSH2	P25847	964 aa		4.74	□□□□□ -1.65
UBP6	YFR010W	PEX6	P33760	1030 aa		4.74	□□□□□ -1.65
UBP6	YFR010W	VPS35	P34110	944 aa		4.74	□□□□□ -1.65
UBP6	YFR010W	RRN3	P36070	627 aa		4.74	□□□□□ -1.65
UBP6	YFR010W	FET4	P40988	552 aa		4.74	□□□□□ -1.65
UBP6	YFR010W	YJR120W	P47157	116 aa		4.74	□□□□□ -1.65
UBP6	YFR010W	YNL011C	P53980	444 aa		4.74	□□□□□ -1.65
UBP6	YFR010W	CDC55	Q00362	526 aa		4.74	□□□□□ -1.65
UBP6	YFR010W	HAS1	Q03532	505 aa	Known RBP	4.74	□□□□□ -1.65
UBP6	YFR010W	BSC2	Q05611	235 aa		4.74	□□□□□ -1.65
UBP6	YFR010W	RRP9	Q06506	573 aa	Known RBP	4.74	□□□□□ -1.65
UBP6	YFR010W	PSR1	Q07800	427 aa		4.74	□□□□□ -1.65
UBP6	YFR010W	CDC31	P06704	161 aa	Known RBP	4.73	□□□□□ -1.65
UBP6	YFR010W	RSC6	P25632	483 aa		4.73	□□□□□ -1.65
UBP6	YFR010W	SSH4	P32343	579 aa		4.73	□□□□□ -1.65
UBP6	YFR010W	PET112	P33893	541 aa		4.73	□□□□□ -1.65
UBP6	YFR010W	NIT1	P40447	199 aa		4.73	□□□□□ -1.65
UBP6	YFR010W	SAM37	P50110	327 aa		4.73	□□□□□ -1.65
UBP6	YFR010W	SPO71	Q03868	1245 aa		4.73	□□□□□ -1.65
UBP6	YFR010W	HEL2	Q05580	639 aa	Known RBP	4.73	□□□□□ -1.65
UBP6	YFR010W	YLR352W	Q06479	807 aa		4.73	□□□□□ -1.65
UBP6	YFR010W	HOM3	P10869	527 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	RPL8A	P17076	256 aa	Known RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	URA1	P28272	314 aa	Predicted RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	DUR3	P33413	735 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	RKM3	P38222	552 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	YHR020W	P38708	688 aa	Known RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	DOT6	P40059	670 aa	Known RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	NDE1	P40215	560 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	GPP1	P41277	250 aa	Known RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	RSC1	P53236	928 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	HOL1	P53389	586 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	RCF1	Q03713	159 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	GPI13	Q07830	1017 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	APL5	Q08951	932 aa	Known RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	ELG1	Q12050	791 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	CFT2	Q12102	859 aa	Predicted RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	CLF1	Q12309	687 aa	Predicted RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	CEX1	Q12453	761 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	NOP58	Q12499	511 aa	Known RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	ERS1	P17261	260 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	GFD2	P25370	566 aa	Known RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	STE5	P32917	917 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	OMA1	P36163	345 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	ABZ1	P37254	787 aa	Predicted RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	YHR218W	P38899	603 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	RPS26A	P39938	119 aa	Known RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	RPS26B	P39939	119 aa	Known RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	YGR016W	P53209	190 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	TGL2	P54857	326 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	NAN1	Q02931	896 aa	Known RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	MSH6	Q03834	1242 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	VTI1	Q04338	217 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	REC8	Q12188	680 aa		4.72	□□□□□ -1.65
UBP6	YFR010W	CMR1	Q12510	522 aa	Known RBP	4.72	□□□□□ -1.65
UBP6	YFR010W	TPM1	P17536	199 aa	Known RBP	4.71	□□□□□ -1.66
UBP6	YFR010W	MSM1	P22438	575 aa		4.71	□□□□□ -1.66
UBP6	YFR010W	KRR1	P25586	316 aa	Predicted RBP	4.71	□□□□□ -1.66
UBP6	YFR010W	MRS6	P32864	603 aa	Known RBP	4.71	□□□□□ -1.66
UBP6	YFR010W	MAE1	P36013	669 aa	Known RBP	4.71	□□□□□ -1.66
UBP6	YFR010W	ECM2	P38241	364 aa	Known RBP	4.71	□□□□□ -1.66
UBP6	YFR010W	RXT2	P38255	430 aa		4.71	□□□□□ -1.66
UBP6	YFR010W	RIM11	P38615	370 aa		4.71	□□□□□ -1.66
UBP6	YFR010W	YHL008C	P38750	627 aa		4.71	□□□□□ -1.66
UBP6	YFR010W	CIC1	P38779	376 aa	Known RBP	4.71	□□□□□ -1.66
UBP6	YFR010W	SPC105	P53148	917 aa		4.71	□□□□□ -1.66
UBP6	YFR010W	YGR122W	P53272	402 aa		4.71	□□□□□ -1.66
UBP6	YFR010W	SPC19	Q03954	165 aa		4.71	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 10.5 ms