RNA–Protein interactions for RNA: YDL231C

BRE4, Transcript of Zinc finger protein containing five transmembrane domains, yeast

Gene BRE4, Length 3,378 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BRE4	YDL231C	PNT1	P38969	423 aa		4.65	□□□□□ -1.66
BRE4	YDL231C	DIP5	P53388	608 aa		4.65	□□□□□ -1.66
BRE4	YDL231C	RTC4	P53850	401 aa		4.65	□□□□□ -1.66
BRE4	YDL231C	CBK1	P53894	756 aa		4.65	□□□□□ -1.66
BRE4	YDL231C	YLR001C	Q07895	862 aa		4.65	□□□□□ -1.66
BRE4	YDL231C	DDP1	Q99321	188 aa	Known RBP	4.65	□□□□□ -1.66
BRE4	YDL231C	SNF3	P10870	884 aa		4.65	□□□□□ -1.67
BRE4	YDL231C	YKL091C	P33324	310 aa	Known RBP	4.65	□□□□□ -1.67
BRE4	YDL231C	SUL1	P38359	859 aa		4.65	□□□□□ -1.67
BRE4	YDL231C	TPS3	P38426	1054 aa	Known RBP	4.65	□□□□□ -1.67
BRE4	YDL231C	APL4	Q12028	832 aa		4.65	□□□□□ -1.67
BRE4	YDL231C	MAK11	P20484	414 aa	Known RBP	4.64	□□□□□ -1.67
BRE4	YDL231C	ERT1	P38140	529 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	YMR124W	P39523	943 aa	Known RBP	4.64	□□□□□ -1.67
BRE4	YDL231C	ACA1	P39970	489 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	RPN3	P40016	523 aa	Known RBP	4.64	□□□□□ -1.67
BRE4	YDL231C	LYS14	P40971	790 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	TOS3	P43637	560 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	APT1	P49435	187 aa	Known RBP	4.64	□□□□□ -1.67
BRE4	YDL231C	UME1	Q03010	460 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	RRB1	Q04225	511 aa	Known RBP	4.64	□□□□□ -1.67
BRE4	YDL231C	RBA50	Q04418	439 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	YLR407W	Q06070	228 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	TIP41	Q12199	356 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	TAF13	P11747	167 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	YKL023W	P36103	277 aa	Known RBP	4.64	□□□□□ -1.67
BRE4	YDL231C	JNM1	P36224	373 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	NIT1	P40447	199 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	FMS1	P50264	508 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	TOF1	P53840	1238 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	CWC2	Q12046	339 aa	Predicted RBP	4.64	□□□□□ -1.67
BRE4	YDL231C	PMD1	P32634	1753 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	SHP1	P34223	423 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	MYO3	P36006	1272 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	TFG2	P41896	400 aa	Predicted RBP	4.64	□□□□□ -1.67
BRE4	YDL231C	YPT11	P48559	417 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	YGR237C	P50089	785 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	HIF1	Q12373	385 aa		4.64	□□□□□ -1.67
BRE4	YDL231C	FLO11	P08640	1367 aa		4.63	□□□□□ -1.67
BRE4	YDL231C	NUC1	P08466	329 aa		4.63	□□□□□ -1.67
BRE4	YDL231C	VHR2	P40041	505 aa		4.63	□□□□□ -1.67
BRE4	YDL231C	GUP1	P53154	560 aa		4.63	□□□□□ -1.67
BRE4	YDL231C	MDM1	Q01846	1127 aa		4.63	□□□□□ -1.67
BRE4	YDL231C	DSE3	Q08729	430 aa		4.63	□□□□□ -1.67
BRE4	YDL231C	NOP58	Q12499	511 aa	Known RBP	4.63	□□□□□ -1.67
BRE4	YDL231C	SWI6	P09959	803 aa		4.63	□□□□□ -1.67
BRE4	YDL231C	SUP45	P12385	437 aa	Known RBP	4.63	□□□□□ -1.67
BRE4	YDL231C	STT3	P39007	718 aa	Known RBP	4.63	□□□□□ -1.67
BRE4	YDL231C	EMP47	P43555	445 aa		4.63	□□□□□ -1.67
BRE4	YDL231C	YGL039W	P53183	348 aa	Known RBP	4.63	□□□□□ -1.67
BRE4	YDL231C	TBF1	Q02457	562 aa		4.63	□□□□□ -1.67
BRE4	YDL231C	GIR2	Q03768	265 aa	Predicted RBP	4.63	□□□□□ -1.67
BRE4	YDL231C	ATG20	Q07528	640 aa		4.63	□□□□□ -1.67
BRE4	YDL231C	MAM3	Q12296	706 aa		4.63	□□□□□ -1.67
BRE4	YDL231C	SPT2	P06843	333 aa	Predicted RBP	4.62	□□□□□ -1.67
BRE4	YDL231C	MTF2	P10849	440 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	ATG19	P35193	415 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	MCD4	P36051	919 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	EBS1	Q03466	884 aa	Known RBP	4.62	□□□□□ -1.67
BRE4	YDL231C	MLH2	Q07980	695 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	PTC5	Q12511	572 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
BRE4	YDL231C	SMC1	P32908	1225 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	GTT3	P39996	337 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	SEC9	P40357	651 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	SCY1	P53009	804 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	NAF1	P53919	492 aa	Known RBP	4.62	□□□□□ -1.67
BRE4	YDL231C	VIP1	Q06685	1146 aa	Known RBP	4.62	□□□□□ -1.67
BRE4	YDL231C	GPI13	Q07830	1017 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	CEX1	Q12453	761 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	FBP1	P09201	348 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	RAD53	P22216	821 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	PSY4	P38193	441 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	SHC1	P39000	512 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	ATG32	P40458	529 aa		4.62	□□□□□ -1.67
BRE4	YDL231C	MYO5	Q04439	1219 aa	Known RBP	4.62	□□□□□ -1.67
BRE4	YDL231C	NOC3	Q07896	663 aa	Predicted RBP	4.62	□□□□□ -1.67
BRE4	YDL231C	KEL1	P38853	1164 aa	Known RBP	4.61	□□□□□ -1.67
BRE4	YDL231C	ATG3	P40344	310 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	CTR1	P49573	406 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	VPS75	P53853	264 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	JIP4	Q03361	876 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	VPS60	Q03390	229 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	YCG1	Q06680	1035 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	CRD1	Q07560	283 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	PCL8	Q08966	492 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	DUR1,2	P32528	1835 aa	Known RBP	4.61	□□□□□ -1.67
BRE4	YDL231C	PDR1	P12383	1068 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	PFK1	P16861	987 aa	Known RBP	4.61	□□□□□ -1.67
BRE4	YDL231C	DAL7	P21826	554 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	ELM1	P32801	640 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	GEF1	P37020	779 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	NDC80	P40460	691 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	HYR1	P40581	163 aa	Known RBP	4.61	□□□□□ -1.67
BRE4	YDL231C	HOS3	Q02959	697 aa	Known RBP	4.61	□□□□□ -1.67
BRE4	YDL231C	FIG2	P25653	1609 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	CBP3	P21560	335 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	MRM1	P25270	412 aa		4.61	□□□□□ -1.67
BRE4	YDL231C	PDC6	P26263	563 aa	Known RBP	4.61	□□□□□ -1.67
BRE4	YDL231C	RRN6	P32786	894 aa		4.61	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 17.7 ms