RNA–Protein interactions for RNA: YDL020C

RPN4, Transcript of Transcription factor that stimulates expression of proteasome genes, yeast

Gene RPN4, Length 1,596 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN4	YDL020C	RPL8B	P29453	256 aa	Known RBP	5.51	□□□□□ -1.53
RPN4	YDL020C	MDJ1	P35191	511 aa		5.51	□□□□□ -1.53
RPN4	YDL020C	NMD2	P38798	1089 aa	Known RBP	5.51	□□□□□ -1.53
RPN4	YDL020C	PRY1	P47032	299 aa		5.51	□□□□□ -1.53
RPN4	YDL020C	FMP25	Q08023	583 aa		5.51	□□□□□ -1.53
RPN4	YDL020C	FLC1	Q08967	793 aa		5.51	□□□□□ -1.53
RPN4	YDL020C	YPL260W	Q08977	551 aa		5.51	□□□□□ -1.53
RPN4	YDL020C	GNT1	Q12096	491 aa		5.51	□□□□□ -1.53
RPN4	YDL020C	SBP1	P10080	294 aa	Known RBP	5.5	□□□□□ -1.53
RPN4	YDL020C	KIP1	P28742	1111 aa		5.5	□□□□□ -1.53
RPN4	YDL020C	MBP1	P39678	833 aa		5.5	□□□□□ -1.53
RPN4	YDL020C	PFD1	P46988	109 aa		5.5	□□□□□ -1.53
RPN4	YDL020C	YGR125W	P53273	1036 aa		5.5	□□□□□ -1.53
RPN4	YDL020C	PPG1	P32838	368 aa		5.5	□□□□□ -1.53
RPN4	YDL020C	NMD3	P38861	518 aa	Known RBP	5.5	□□□□□ -1.53
RPN4	YDL020C	ERP6	P53198	216 aa		5.5	□□□□□ -1.53
RPN4	YDL020C	HRK1	Q08732	759 aa	Known RBP	5.5	□□□□□ -1.53
RPN4	YDL020C	SPO21	Q12411	609 aa		5.5	□□□□□ -1.53
RPN4	YDL020C	YER152C	P10356	443 aa		5.49	□□□□□ -1.53
RPN4	YDL020C	HSP60	P19882	572 aa	Known RBP	5.49	□□□□□ -1.53
RPN4	YDL020C	GPB2	P39717	880 aa		5.49	□□□□□ -1.53
RPN4	YDL020C	RSP5	P39940	809 aa	Known RBP	5.49	□□□□□ -1.53
RPN4	YDL020C	SIP5	P40210	489 aa	Known RBP	5.49	□□□□□ -1.53
RPN4	YDL020C	EAF1	Q06337	982 aa		5.49	□□□□□ -1.53
RPN4	YDL020C	GIC2	Q06648	383 aa		5.49	□□□□□ -1.53
RPN4	YDL020C	PPM2	Q08282	695 aa		5.49	□□□□□ -1.53
RPN4	YDL020C	RPS4A	P0CX35	261 aa	Known RBP	5.48	□□□□□ -1.53
RPN4	YDL020C	RPS4B	P0CX36	261 aa	Known RBP	5.48	□□□□□ -1.53
RPN4	YDL020C	ARE1	P25628	610 aa		5.48	□□□□□ -1.53
RPN4	YDL020C	YJL045W	P47052	634 aa		5.48	□□□□□ -1.53
RPN4	YDL020C	ALT1	P52893	592 aa		5.48	□□□□□ -1.53
RPN4	YDL020C	ARI1	P53111	347 aa	Known RBP	5.48	□□□□□ -1.53
RPN4	YDL020C	UTP8	P53276	713 aa	Known RBP	5.48	□□□□□ -1.53
RPN4	YDL020C	SPP382	Q06411	708 aa	Predicted RBP	5.48	□□□□□ -1.53
RPN4	YDL020C	YDR215C	Q12240	137 aa		5.48	□□□□□ -1.53
RPN4	YDL020C	CIT1	P00890	479 aa		5.47	□□□□□ -1.53
RPN4	YDL020C	PRP9	P19736	530 aa	Known RBP	5.47	□□□□□ -1.53
RPN4	YDL020C	CHZ1	P40019	153 aa	Predicted RBP	5.47	□□□□□ -1.53
RPN4	YDL020C	YMR187C	Q03236	431 aa		5.47	□□□□□ -1.53
RPN4	YDL020C	TPP1	Q03796	238 aa		5.47	□□□□□ -1.53
RPN4	YDL020C	PUS7	Q08647	676 aa	Known RBP	5.47	□□□□□ -1.53
RPN4	YDL020C	BRN1	P38170	754 aa		5.46	□□□□□ -1.53
RPN4	YDL020C	SLN1	P39928	1220 aa	Predicted RBP	5.46	□□□□□ -1.53
RPN4	YDL020C	NUP82	P40368	713 aa		5.46	□□□□□ -1.53
RPN4	YDL020C	ALR2	P43553	858 aa		5.46	□□□□□ -1.53
RPN4	YDL020C	UBX5	Q06682	500 aa		5.46	□□□□□ -1.53
RPN4	YDL020C	RPL11A	P0C0W9	174 aa	Known RBP	5.46	□□□□□ -1.54
RPN4	YDL020C	GAL11	P19659	1081 aa		5.46	□□□□□ -1.54
RPN4	YDL020C	YCK2	P23292	546 aa	Known RBP	5.46	□□□□□ -1.54
RPN4	YDL020C	TIM23	P32897	222 aa		5.46	□□□□□ -1.54
RPN4	YDL020C	RRP14	P36080	434 aa	Known RBP	5.46	□□□□□ -1.54
RPN4	YDL020C	GGA2	P38817	585 aa	Known RBP	5.46	□□□□□ -1.54
RPN4	YDL020C	PNT1	P38969	423 aa		5.46	□□□□□ -1.54
RPN4	YDL020C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	5.46	□□□□□ -1.54	not detected
RPN4	YDL020C	ALG12	P53730	551 aa		5.46	□□□□□ -1.54
RPN4	YDL020C	EAR1	Q03212	550 aa		5.46	□□□□□ -1.54
RPN4	YDL020C	RPL11B	Q3E757	174 aa	Predicted RBP	5.46	□□□□□ -1.54
RPN4	YDL020C	CAN1	P04817	590 aa		5.45	□□□□□ -1.54
RPN4	YDL020C	NAM7	P30771	971 aa	Known RBP	5.45	□□□□□ -1.54
RPN4	YDL020C	TAT1	P38085	619 aa		5.45	□□□□□ -1.54
RPN4	YDL020C	AKR1	P39010	764 aa		5.45	□□□□□ -1.54
RPN4	YDL020C	RPN3	P40016	523 aa	Known RBP	5.45	□□□□□ -1.54
RPN4	YDL020C	DOS2	P54858	310 aa		5.45	□□□□□ -1.54
RPN4	YDL020C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	5.45	□□□□□ -1.54	not detected
RPN4	YDL020C	PHM7	Q12252	991 aa		5.45	□□□□□ -1.54
RPN4	YDL020C	YPR053C	Q6Q5F3	151 aa		5.45	□□□□□ -1.54
RPN4	YDL020C	DBP2	P24783	546 aa	Known RBP	5.44	□□□□□ -1.54
RPN4	YDL020C	YSC84	P32793	468 aa		5.44	□□□□□ -1.54
RPN4	YDL020C	SPC42	P36094	363 aa		5.44	□□□□□ -1.54
RPN4	YDL020C	MXR1	P40029	184 aa		5.44	□□□□□ -1.54
RPN4	YDL020C	HUL4	P40985	892 aa		5.44	□□□□□ -1.54
RPN4	YDL020C	HOS3	Q02959	697 aa	Known RBP	5.44	□□□□□ -1.54
RPN4	YDL020C	TAF8	Q03750	510 aa		5.44	□□□□□ -1.54
RPN4	YDL020C	PHO8	P11491	566 aa		5.43	□□□□□ -1.54
RPN4	YDL020C	MMM1	P41800	426 aa		5.43	□□□□□ -1.54
RPN4	YDL020C	WHI3	P34761	661 aa	Known RBP	5.42	□□□□□ -1.54
RPN4	YDL020C	TNA1	P53322	534 aa		5.42	□□□□□ -1.54
RPN4	YDL020C	YDR306C	Q06640	478 aa		5.42	□□□□□ -1.54
RPN4	YDL020C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	5.42	□□□□□ -1.54	not detected
RPN4	YDL020C	YLR125W	Q12138	136 aa		5.42	□□□□□ -1.54
RPN4	YDL020C	MET6	P05694	767 aa	Known RBP	5.42	□□□□□ -1.54
RPN4	YDL020C	ERR1	P0CX10	437 aa		5.42	□□□□□ -1.54
RPN4	YDL020C	ERR2	P0CX11	437 aa		5.42	□□□□□ -1.54
RPN4	YDL020C	HBS1	P32769	611 aa	Known RBP	5.42	□□□□□ -1.54
RPN4	YDL020C	CCC2	P38995	1004 aa		5.42	□□□□□ -1.54
RPN4	YDL020C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	5.42	□□□□□ -1.54	not detected
RPN4	YDL020C	TPO2	P53283	614 aa		5.42	□□□□□ -1.54
RPN4	YDL020C	YDL124W	Q07551	312 aa	Known RBP	5.42	□□□□□ -1.54
RPN4	YDL020C	ACM1	Q08981	209 aa		5.42	□□□□□ -1.54
RPN4	YDL020C	YVC1	Q12324	675 aa		5.42	□□□□□ -1.54
RPN4	YDL020C	COQ4	O13525	335 aa		5.41	□□□□□ -1.54
RPN4	YDL020C	AAR2	P32357	355 aa	Predicted RBP	5.41	□□□□□ -1.54
RPN4	YDL020C	SAF1	P38352	637 aa		5.41	□□□□□ -1.54
RPN4	YDL020C	SKN7	P38889	622 aa		5.41	□□□□□ -1.54
RPN4	YDL020C	GEM1	P39722	662 aa		5.41	□□□□□ -1.54
RPN4	YDL020C	YFL054C	P43549	646 aa		5.41	□□□□□ -1.54
RPN4	YDL020C	CIT3	P43635	486 aa		5.41	□□□□□ -1.54
RPN4	YDL020C	RTA1	P53047	317 aa		5.41	□□□□□ -1.54
RPN4	YDL020C	DUS3	Q06053	668 aa	Known RBP	5.41	□□□□□ -1.54
RPN4	YDL020C	SNF5	P18480	905 aa		5.4	□□□□□ -1.55

Retrieved 100 of 5,963 RNA–protein pairs in 9.5 ms