Protein–RNA interactions for Protein: P18480

SNF5, SWI/SNF chromatin-remodeling complex subunit SNF5, yeastyeast

Predictions only

Length 905 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SNF5P18480 YML009W-BYML009W-B 477 nt19.86■□□□□ 0.77
SNF5P18480 NOP1YDL014W 984 nt19.53■□□□□ 0.72
SNF5P18480 NSR1YGR159C 1245 nt19.45■□□□□ 0.7
SNF5P18480 YKL036CYKL036C 393 nt18.44■□□□□ 0.54
SNF5P18480 Q0297Q0297 156 nt17.29■□□□□ 0.36
SNF5P18480 YJL027CYJL027C 417 nt17.26■□□□□ 0.35
SNF5P18480 SRX1YKL086W 384 nt17.1■□□□□ 0.33
SNF5P18480 SCS3YGL126W 1143 nt17■□□□□ 0.31
SNF5P18480 MDJ1YFL016C 1536 nt16.77■□□□□ 0.28
SNF5P18480 YCR051WYCR051W 669 nt16.19■□□□□ 0.18
SNF5P18480 YOL085CYOL085C 342 nt15.97■□□□□ 0.15
SNF5P18480 SCJ1YMR214W 1134 nt15.68■□□□□ 0.1
SNF5P18480 PKP1YIL042C 1185 nt15.61■□□□□ 0.09
SNF5P18480 RPP1BYDL130W 321 nt15.49■□□□□ 0.07
SNF5P18480 ATS1YAL020C 1002 nt15.35■□□□□ 0.05
SNF5P18480 TRN1tP(UGG)A 72 nt15.19■□□□□ 0.02
SNF5P18480 SUF9tP(UGG)F 72 nt15.19■□□□□ 0.02
SNF5P18480 SUF8tP(UGG)H 72 nt15.19■□□□□ 0.02
SNF5P18480 tP(UGG)LtP(UGG)L 72 nt15.19■□□□□ 0.02
SNF5P18480 SUF7tP(UGG)M 72 nt15.19■□□□□ 0.02
SNF5P18480 tP(UGG)N1tP(UGG)N1 72 nt15.19■□□□□ 0.02
SNF5P18480 tP(UGG)N2tP(UGG)N2 72 nt15.19■□□□□ 0.02
SNF5P18480 tP(UGG)O1tP(UGG)O1 72 nt15.19■□□□□ 0.02
SNF5P18480 SUF11tP(UGG)O2 72 nt15.19■□□□□ 0.02
SNF5P18480 DBP2YNL112W 1641 nt15.09■□□□□ 0.01
SNF5P18480 CCC1YLR220W 969 nt14.97□□□□□ -0.01
SNF5P18480 PET122YER153C 765 nt14.72□□□□□ -0.05
SNF5P18480 SCR1SCR1 522 nt14.67□□□□□ -0.06
SNF5P18480 tP(UGG)O3tP(UGG)O3 72 nt14.51□□□□□ -0.09
SNF5P18480 RRN5YLR141W 1092 nt14.36□□□□□ -0.11
SNF5P18480 YBR190WYBR190W 312 nt14.24□□□□□ -0.13
SNF5P18480 RVS167YDR388W 1449 nt14.22□□□□□ -0.13
SNF5P18480 PST2YDR032C 597 nt14.17□□□□□ -0.14
SNF5P18480 RTC3YHR087W 336 nt14.17□□□□□ -0.14
SNF5P18480 RSB1YOR049C 1065 nt14.15□□□□□ -0.14
SNF5P18480 YER088W-BYER088W-B 147 nt14.08□□□□□ -0.16
SNF5P18480 YDJ1YNL064C 1230 nt14.07□□□□□ -0.16
SNF5P18480 SHR5YOL110W 714 nt13.87□□□□□ -0.19
SNF5P18480 YKL097CYKL097C 411 nt13.78□□□□□ -0.2
SNF5P18480 GAR1YHR089C 618 nt13.61□□□□□ -0.23
SNF5P18480 SHU1YHL006C 453 nt13.45□□□□□ -0.26
SNF5P18480 DEP1YAL013W 1218 nt13.27□□□□□ -0.29
SNF5P18480 YOR139CYOR139C 393 nt13.19□□□□□ -0.3
SNF5P18480 URN1YPR152C 1398 nt13.19□□□□□ -0.3
SNF5P18480 SSA3YBL075C 1950 nt13.18□□□□□ -0.3
SNF5P18480 TIR1YER011W 765 nt13.17□□□□□ -0.3
SNF5P18480 YNL208WYNL208W 600 nt13.16□□□□□ -0.3
SNF5P18480 RPN10YHR200W 807 nt13.09□□□□□ -0.31
SNF5P18480 YAL037C-BYAL037C-B 975 nt13.08□□□□□ -0.32
SNF5P18480 OPI9YLR338W 858 nt12.94□□□□□ -0.34
SNF5P18480 NPL3YDR432W 1245 nt12.92□□□□□ -0.34
SNF5P18480 SSA1YAL005C 1929 nt12.92□□□□□ -0.34
SNF5P18480 Q0182Q0182 405 nt12.85□□□□□ -0.35
SNF5P18480 SRB2YHR041C 633 nt12.8□□□□□ -0.36
SNF5P18480 YGR021WYGR021W 873 nt12.72□□□□□ -0.37
SNF5P18480 HOM6YJR139C 1080 nt12.72□□□□□ -0.37
SNF5P18480 SAH1YER043C 1350 nt12.71□□□□□ -0.37
SNF5P18480 YOL037CYOL037C 354 nt12.68□□□□□ -0.38
SNF5P18480 MNP1YGL068W 585 nt12.67□□□□□ -0.38
SNF5P18480 MOT3YMR070W 1473 nt12.66□□□□□ -0.38
SNF5P18480 WWM1YFL010C 636 nt12.65□□□□□ -0.38
SNF5P18480 tM(CAU)CtM(CAU)C 72 nt12.65□□□□□ -0.38
SNF5P18480 IMT4tM(CAU)E 72 nt12.65□□□□□ -0.38
SNF5P18480 IMT3tM(CAU)J3 72 nt12.65□□□□□ -0.38
SNF5P18480 IMT1tM(CAU)O1 72 nt12.65□□□□□ -0.38
SNF5P18480 IMT2tM(CAU)P 72 nt12.65□□□□□ -0.38
SNF5P18480 YJR018WYJR018W 363 nt12.63□□□□□ -0.39
SNF5P18480 PUT4YOR348C 1884 nt12.59□□□□□ -0.39
SNF5P18480 YJR120WYJR120W 351 nt12.56□□□□□ -0.4
SNF5P18480 PUN1YLR414C 792 nt12.56□□□□□ -0.4
SNF5P18480 RKM5YLR137W 1104 nt12.52□□□□□ -0.41
SNF5P18480 ARE1YCR048W 1833 nt12.49□□□□□ -0.41
SNF5P18480 YFL021C-AYFL021C-A 855 nt12.47□□□□□ -0.41
SNF5P18480 RPP2BYDR382W 333 nt12.46□□□□□ -0.41
SNF5P18480 YLR281CYLR281C 468 nt12.37□□□□□ -0.43
SNF5P18480 PUS2YGL063W 1113 nt12.36□□□□□ -0.43
SNF5P18480 BDH2YAL061W 1254 nt12.33□□□□□ -0.44
SNF5P18480 PTC2YER089C 1395 nt12.3□□□□□ -0.44
SNF5P18480 YHR049C-AYHR049C-A 297 nt12.29□□□□□ -0.44
SNF5P18480 LSM3YLR438C-A 270 nt12.29□□□□□ -0.44
SNF5P18480 WHI5YOR083W 888 nt12.24□□□□□ -0.45
SNF5P18480 POA1YBR022W 534 nt12.2□□□□□ -0.46
SNF5P18480 INM2YDR287W 879 nt12.14□□□□□ -0.47
SNF5P18480 BSC6YOL137W 1494 nt12.11□□□□□ -0.47
SNF5P18480 NAB2YGL122C 1578 nt12.1□□□□□ -0.47
SNF5P18480 YPR011CYPR011C 981 nt12.06□□□□□ -0.48
SNF5P18480 YBL100CYBL100C 315 nt12.05□□□□□ -0.48
SNF5P18480 MRPL8YJL063C 717 nt12.04□□□□□ -0.48
SNF5P18480 FMP45YDL222C 930 nt12.02□□□□□ -0.49
SNF5P18480 DSK2YMR276W 1122 nt12.02□□□□□ -0.49
SNF5P18480 DAL1YIR027C 1383 nt12.02□□□□□ -0.49
SNF5P18480 BUD23YCR047C 828 nt12.01□□□□□ -0.49
SNF5P18480 IMP2'YIL154C 1041 nt12□□□□□ -0.49
SNF5P18480 TRM9YML014W 840 nt12□□□□□ -0.49
SNF5P18480 FIS1YIL065C 468 nt11.98□□□□□ -0.49
SNF5P18480 YCH1YGR203W 447 nt11.97□□□□□ -0.49
SNF5P18480 YLR236CYLR236C 324 nt11.96□□□□□ -0.49
SNF5P18480 FUN26YAL022C 1554 nt11.94□□□□□ -0.5
SNF5P18480 FPR4YLR449W 1179 nt11.93□□□□□ -0.5
SNF5P18480 YLR154C-GYLR154C-G 150 nt11.92□□□□□ -0.5
Retrieved 100 of 7,029 protein–RNA pairs in 14.8 ms