Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
COPB1P53618 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COPB1P53618 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COPB1P53618 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.71■□□□□ 0.91
COPB1P53618 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.71■□□□□ 0.91
COPB1P53618 AC073592.3-201ENST00000625118 1834 ntBASIC20.71■□□□□ 0.91
COPB1P53618 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COPB1P53618 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COPB1P53618 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.7■□□□□ 0.91
COPB1P53618 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPB1P53618 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
COPB1P53618 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COPB1P53618 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
COPB1P53618 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.7■□□□□ 0.9
COPB1P53618 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
COPB1P53618 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPB1P53618 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
COPB1P53618 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPB1P53618 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPB1P53618 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COPB1P53618 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPB1P53618 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPB1P53618 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.7■□□□□ 0.9
COPB1P53618 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
COPB1P53618 AL355802.2-201ENST00000402069 882 ntBASIC20.7■□□□□ 0.9
COPB1P53618 Z85996.1-201ENST00000494644 937 ntBASIC20.7■□□□□ 0.9
COPB1P53618 AP003097.1-201ENST00000530657 1135 ntBASIC20.7■□□□□ 0.9
COPB1P53618 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.7■□□□□ 0.9
COPB1P53618 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
COPB1P53618 RCC2P6-201ENST00000526625 1557 ntBASIC20.7■□□□□ 0.9
COPB1P53618 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.7■□□□□ 0.9
COPB1P53618 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.7■□□□□ 0.9
COPB1P53618 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.7■□□□□ 0.9
COPB1P53618 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPB1P53618 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.7■□□□□ 0.9
COPB1P53618 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.7■□□□□ 0.9
COPB1P53618 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPB1P53618 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
COPB1P53618 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.69■□□□□ 0.9
COPB1P53618 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.69■□□□□ 0.9
COPB1P53618 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
COPB1P53618 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.69■□□□□ 0.9
COPB1P53618 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
COPB1P53618 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COPB1P53618 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COPB1P53618 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.69■□□□□ 0.9
COPB1P53618 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.69■□□□□ 0.9
COPB1P53618 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.69■□□□□ 0.9
COPB1P53618 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.68■□□□□ 0.9
COPB1P53618 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.68■□□□□ 0.9
COPB1P53618 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.68■□□□□ 0.9
COPB1P53618 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
COPB1P53618 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
COPB1P53618 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.68■□□□□ 0.9
COPB1P53618 POU5F1P3-201ENST00000428824 1078 ntBASIC20.68■□□□□ 0.9
COPB1P53618 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.68■□□□□ 0.9
COPB1P53618 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.68■□□□□ 0.9
COPB1P53618 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.68■□□□□ 0.9
COPB1P53618 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.68■□□□□ 0.9
COPB1P53618 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.68■□□□□ 0.9
COPB1P53618 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.68■□□□□ 0.9
COPB1P53618 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.68■□□□□ 0.9
COPB1P53618 AL133373.2-201ENST00000623187 2828 ntBASIC20.68■□□□□ 0.9
COPB1P53618 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 AC005332.8-201ENST00000622750 2735 ntBASIC20.68■□□□□ 0.9
COPB1P53618 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPB1P53618 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COPB1P53618 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.67■□□□□ 0.9
COPB1P53618 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms