Protein–RNA interactions for Protein: P25336

MSH3, DNA mismatch repair protein MSH3, yeastyeast

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH3P25336 SNU66YOR308C 1764 nt8.73□□□□□ -1.01
MSH3P25336 PMT7YDR307W 1989 nt8.72□□□□□ -1.01
MSH3P25336 GNP1YDR508C 1992 nt8.72□□□□□ -1.01
MSH3P25336 RMA1YKL132C 1293 nt8.72□□□□□ -1.01
MSH3P25336 SWP1YMR149W 861 nt8.72□□□□□ -1.01
MSH3P25336 YNL165WYNL165W 1221 nt8.72□□□□□ -1.01
MSH3P25336 NDE2YDL085W 1638 nt8.72□□□□□ -1.01
MSH3P25336 PAU19YMR325W 375 nt8.71□□□□□ -1.02
MSH3P25336 PUP1YOR157C 786 nt8.71□□□□□ -1.02
MSH3P25336 MAS2YHR024C 1449 nt8.71□□□□□ -1.02
MSH3P25336 YCR025CYCR025C 411 nt8.7□□□□□ -1.02
MSH3P25336 YNL140CYNL140C 570 nt8.7□□□□□ -1.02
MSH3P25336 OLA1YBR025C 1185 nt8.7□□□□□ -1.02
MSH3P25336 TGL5YOR081C 2250 nt8.7□□□□□ -1.02
MSH3P25336 SER2YGR208W 930 nt8.69□□□□□ -1.02
MSH3P25336 TDA4YJR116W 840 nt8.69□□□□□ -1.02
MSH3P25336 YMR253CYMR253C 1245 nt8.69□□□□□ -1.02
MSH3P25336 OCH1YGL038C 1443 nt8.69□□□□□ -1.02
MSH3P25336 MSB3YNL293W 1902 nt8.68□□□□□ -1.02
MSH3P25336 INM1YHR046C 888 nt8.68□□□□□ -1.02
MSH3P25336 CDC13YDL220C 2775 nt8.67□□□□□ -1.02
MSH3P25336 YJL211CYJL211C 444 nt8.67□□□□□ -1.02
MSH3P25336 SPE4YLR146C 903 nt8.67□□□□□ -1.02
MSH3P25336 ERR3YMR323W 1314 nt8.67□□□□□ -1.02
MSH3P25336 ERR1YOR393W 1314 nt8.67□□□□□ -1.02
MSH3P25336 ERR2YPL281C 1314 nt8.67□□□□□ -1.02
MSH3P25336 WSC4YHL028W 1818 nt8.66□□□□□ -1.02
MSH3P25336 EEB1YPL095C 1371 nt8.66□□□□□ -1.02
MSH3P25336 YGR210CYGR210C 1236 nt8.66□□□□□ -1.02
MSH3P25336 ERG6YML008C 1152 nt8.66□□□□□ -1.02
MSH3P25336 YMR166CYMR166C 1107 nt8.66□□□□□ -1.02
MSH3P25336 HXT13YEL069C 1695 nt8.65□□□□□ -1.02
MSH3P25336 YNL040WYNL040W 1371 nt8.65□□□□□ -1.02
MSH3P25336 CAK1YFL029C 1107 nt8.65□□□□□ -1.02
MSH3P25336 AST1YBL069W 1290 nt8.65□□□□□ -1.02
MSH3P25336 HTS1YPR033C 1641 nt8.64□□□□□ -1.03
MSH3P25336 RCF1YML030W 480 nt8.63□□□□□ -1.03
MSH3P25336 WSC3YOL105C 1671 nt8.62□□□□□ -1.03
MSH3P25336 HOS2YGL194C 1359 nt8.62□□□□□ -1.03
MSH3P25336 ATG22YCL038C 1587 nt8.62□□□□□ -1.03
MSH3P25336 ARO3YDR035W 1113 nt8.62□□□□□ -1.03
MSH3P25336 RHO1YPR165W 630 nt8.62□□□□□ -1.03
MSH3P25336 SHC1YER096W 1539 nt8.61□□□□□ -1.03
MSH3P25336 PUP3YER094C 618 nt8.61□□□□□ -1.03
MSH3P25336 IDP3YNL009W 1263 nt8.61□□□□□ -1.03
MSH3P25336 YPL108WYPL108W 507 nt8.61□□□□□ -1.03
MSH3P25336 AQR1YNL065W 1761 nt8.61□□□□□ -1.03
MSH3P25336 ALG7YBR243C 1347 nt8.6□□□□□ -1.03
MSH3P25336 RRT14YIL127C 621 nt8.6□□□□□ -1.03
MSH3P25336 HXT8YJL214W 1710 nt8.6□□□□□ -1.03
MSH3P25336 COX16YJL003W 357 nt8.59□□□□□ -1.03
MSH3P25336 SKG1YKR100C 1068 nt8.59□□□□□ -1.03
MSH3P25336 LSP1YPL004C 1026 nt8.59□□□□□ -1.03
MSH3P25336 KTR4YBR199W 1395 nt8.59□□□□□ -1.03
MSH3P25336 TGA1tA(UGC)A 73 nt8.58□□□□□ -1.04
MSH3P25336 tA(UGC)EtA(UGC)E 73 nt8.58□□□□□ -1.04
MSH3P25336 tA(UGC)GtA(UGC)G 73 nt8.58□□□□□ -1.04
MSH3P25336 tA(UGC)LtA(UGC)L 73 nt8.58□□□□□ -1.04
MSH3P25336 tA(UGC)OtA(UGC)O 73 nt8.58□□□□□ -1.04
MSH3P25336 YJL107CYJL107C 1164 nt8.58□□□□□ -1.04
MSH3P25336 MRP7YNL005C 1116 nt8.58□□□□□ -1.04
MSH3P25336 SLG1YOR008C 1137 nt8.58□□□□□ -1.04
MSH3P25336 YPL264CYPL264C 1062 nt8.58□□□□□ -1.04
MSH3P25336 MET13YGL125W 1803 nt8.57□□□□□ -1.04
MSH3P25336 THI73YLR004C 1572 nt8.56□□□□□ -1.04
MSH3P25336 RPL2AYFR031C-A 765 nt8.56□□□□□ -1.04
MSH3P25336 YGR137WYGR137W 375 nt8.56□□□□□ -1.04
MSH3P25336 FCP1YMR277W 2199 nt8.55□□□□□ -1.04
MSH3P25336 SWM1YDR260C 513 nt8.55□□□□□ -1.04
MSH3P25336 YHL030W-AYHL030W-A 462 nt8.55□□□□□ -1.04
MSH3P25336 SAM50YNL026W 1455 nt8.55□□□□□ -1.04
MSH3P25336 PMT1YDL095W 2454 nt8.55□□□□□ -1.04
MSH3P25336 RSM23YGL129C 1353 nt8.53□□□□□ -1.04
MSH3P25336 YNR068CYNR068C 819 nt8.53□□□□□ -1.04
MSH3P25336 HXT9YJL219W 1704 nt8.53□□□□□ -1.04
MSH3P25336 YBL111CYBL111C 2004 nt8.53□□□□□ -1.04
MSH3P25336 YMR147WYMR147W 672 nt8.52□□□□□ -1.05
MSH3P25336 ELP6YMR312W 822 nt8.52□□□□□ -1.05
MSH3P25336 APM1YPL259C 1428 nt8.52□□□□□ -1.05
MSH3P25336 YER152CYER152C 1332 nt8.52□□□□□ -1.05
MSH3P25336 YPT31YER031C 672 nt8.51□□□□□ -1.05
MSH3P25336 SCO2YBR024W 906 nt8.51□□□□□ -1.05
MSH3P25336 PZF1YPR186C 1290 nt8.51□□□□□ -1.05
MSH3P25336 TIM50YPL063W 1431 nt8.51□□□□□ -1.05
MSH3P25336 POB3YML069W 1659 nt8.49□□□□□ -1.05
MSH3P25336 TPO1YLL028W 1761 nt8.49□□□□□ -1.05
MSH3P25336 PET18YCR020C 648 nt8.48□□□□□ -1.05
MSH3P25336 YEL034C-AYEL034C-A 603 nt8.48□□□□□ -1.05
MSH3P25336 SNP1YIL061C 903 nt8.48□□□□□ -1.05
MSH3P25336 BXI1YNL305C 894 nt8.48□□□□□ -1.05
MSH3P25336 PRE10YOR362C 867 nt8.48□□□□□ -1.05
MSH3P25336 FCY1YPR062W 477 nt8.48□□□□□ -1.05
MSH3P25336 YCP4YCR004C 744 nt8.47□□□□□ -1.05
MSH3P25336 YER156CYER156C 1017 nt8.47□□□□□ -1.05
MSH3P25336 YJL160CYJL160C 864 nt8.47□□□□□ -1.05
MSH3P25336 JHD1YER051W 1479 nt8.46□□□□□ -1.05
MSH3P25336 MTC6YHR151C 1581 nt8.46□□□□□ -1.06
MSH3P25336 SGF73YGL066W 1974 nt8.45□□□□□ -1.06
MSH3P25336 snR78snR78 87 nt8.45□□□□□ -1.06
MSH3P25336 YGL118CYGL118C 438 nt8.45□□□□□ -1.06
Retrieved 100 of 7,029 protein–RNA pairs in 32.4 ms