Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.97■■□□□ 1.43
LDB3O75112 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
LDB3O75112 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
LDB3O75112 DUX4L13-201ENST00000554103 1267 ntBASIC23.96■■□□□ 1.43
LDB3O75112 DUX4L15-201ENST00000611059 1267 ntBASIC23.96■■□□□ 1.43
LDB3O75112 DUX4L23-201ENST00000615195 1269 ntBASIC23.96■■□□□ 1.43
LDB3O75112 DUX4L24-201ENST00000617576 1269 ntBASIC23.96■■□□□ 1.43
LDB3O75112 DUX4L22-201ENST00000618238 1269 ntBASIC23.96■■□□□ 1.43
LDB3O75112 DUX4L20-201ENST00000619712 1269 ntBASIC23.96■■□□□ 1.43
LDB3O75112 DUX4L21-201ENST00000622058 1269 ntBASIC23.96■■□□□ 1.43
LDB3O75112 DUX4L10-201ENST00000622460 1267 ntBASIC23.96■■□□□ 1.43
LDB3O75112 DUX4L25-201ENST00000624915 1269 ntBASIC23.96■■□□□ 1.43
LDB3O75112 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
LDB3O75112 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.95■■□□□ 1.42
LDB3O75112 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
LDB3O75112 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
LDB3O75112 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
LDB3O75112 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
LDB3O75112 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.94■■□□□ 1.42
LDB3O75112 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
LDB3O75112 AC110285.7-201ENST00000624417 1536 ntBASIC23.94■■□□□ 1.42
LDB3O75112 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
LDB3O75112 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
LDB3O75112 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.92■■□□□ 1.42
LDB3O75112 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
LDB3O75112 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.91■■□□□ 1.42
LDB3O75112 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
LDB3O75112 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.9■■□□□ 1.42
LDB3O75112 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
LDB3O75112 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
LDB3O75112 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
LDB3O75112 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.89■■□□□ 1.42
LDB3O75112 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
LDB3O75112 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
LDB3O75112 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
LDB3O75112 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
LDB3O75112 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.89■■□□□ 1.41
LDB3O75112 CR559946.2-201ENST00000623684 991 ntBASIC23.89■■□□□ 1.41
LDB3O75112 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
LDB3O75112 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.88■■□□□ 1.41
LDB3O75112 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.88■■□□□ 1.41
LDB3O75112 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.88■■□□□ 1.41
LDB3O75112 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
LDB3O75112 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
LDB3O75112 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.87■■□□□ 1.41
LDB3O75112 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
LDB3O75112 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
LDB3O75112 MIR3648-2-201ENST00000581792 180 ntBASIC23.87■■□□□ 1.41
LDB3O75112 MIR3648-1-201ENST00000615959 180 ntBASIC23.87■■□□□ 1.41
LDB3O75112 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
LDB3O75112 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
LDB3O75112 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
LDB3O75112 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
LDB3O75112 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.86■■□□□ 1.41
LDB3O75112 AP002414.2-202ENST00000590929 1450 ntBASIC23.86■■□□□ 1.41
LDB3O75112 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
LDB3O75112 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.85■■□□□ 1.41
LDB3O75112 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
LDB3O75112 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
LDB3O75112 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.85■■□□□ 1.41
LDB3O75112 AC016575.1-201ENST00000607026 382 ntBASIC23.85■■□□□ 1.41
LDB3O75112 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
LDB3O75112 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
LDB3O75112 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
LDB3O75112 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC23.84■■□□□ 1.41
LDB3O75112 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
LDB3O75112 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.84■■□□□ 1.41
LDB3O75112 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
LDB3O75112 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.84■■□□□ 1.41
LDB3O75112 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.83■■□□□ 1.41
LDB3O75112 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
LDB3O75112 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
LDB3O75112 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
LDB3O75112 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
LDB3O75112 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.4
LDB3O75112 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.82■■□□□ 1.4
LDB3O75112 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.82■■□□□ 1.4
LDB3O75112 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.82■■□□□ 1.4
LDB3O75112 AC142086.6-201ENST00000621154 1765 ntBASIC23.81■■□□□ 1.4
LDB3O75112 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
LDB3O75112 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
LDB3O75112 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
LDB3O75112 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.8■■□□□ 1.4
LDB3O75112 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
LDB3O75112 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.8■■□□□ 1.4
LDB3O75112 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
LDB3O75112 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LDB3O75112 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LDB3O75112 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
LDB3O75112 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LDB3O75112 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
LDB3O75112 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LDB3O75112 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.77■■□□□ 1.4
LDB3O75112 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
LDB3O75112 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.76■■□□□ 1.39
LDB3O75112 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LDB3O75112 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.75■■□□□ 1.39
LDB3O75112 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.75■■□□□ 1.39
LDB3O75112 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
LDB3O75112 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms