Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.13■□□□□ 0.97
COPB1P53618 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.13■□□□□ 0.97
COPB1P53618 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.13■□□□□ 0.97
COPB1P53618 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.13■□□□□ 0.97
COPB1P53618 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.13■□□□□ 0.97
COPB1P53618 MYC-209ENST00000641252 345 ntBASIC21.13■□□□□ 0.97
COPB1P53618 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
COPB1P53618 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
COPB1P53618 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.13■□□□□ 0.97
COPB1P53618 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.13■□□□□ 0.97
COPB1P53618 AC092368.3-202ENST00000574180 1591 ntBASIC21.13■□□□□ 0.97
COPB1P53618 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COPB1P53618 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COPB1P53618 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COPB1P53618 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COPB1P53618 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
COPB1P53618 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.12■□□□□ 0.97
COPB1P53618 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.12■□□□□ 0.97
COPB1P53618 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
COPB1P53618 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COPB1P53618 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.12■□□□□ 0.97
COPB1P53618 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.12■□□□□ 0.97
COPB1P53618 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.12■□□□□ 0.97
COPB1P53618 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.12■□□□□ 0.97
COPB1P53618 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.12■□□□□ 0.97
COPB1P53618 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.12■□□□□ 0.97
COPB1P53618 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COPB1P53618 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.12■□□□□ 0.97
COPB1P53618 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 IRX1P1-201ENST00000438849 1838 ntBASIC21.12■□□□□ 0.97
COPB1P53618 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
COPB1P53618 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.12■□□□□ 0.97
COPB1P53618 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
COPB1P53618 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COPB1P53618 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
COPB1P53618 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.11■□□□□ 0.97
COPB1P53618 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
COPB1P53618 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.11■□□□□ 0.97
COPB1P53618 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.11■□□□□ 0.97
COPB1P53618 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
COPB1P53618 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 TSPY6P-201ENST00000448518 926 ntBASIC21.11■□□□□ 0.97
COPB1P53618 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.11■□□□□ 0.97
COPB1P53618 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.11■□□□□ 0.97
COPB1P53618 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.11■□□□□ 0.97
COPB1P53618 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.11■□□□□ 0.97
COPB1P53618 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 HLA-B-256ENST00000639848 1089 ntBASIC21.11■□□□□ 0.97
COPB1P53618 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COPB1P53618 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
COPB1P53618 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.11■□□□□ 0.97
COPB1P53618 AL031598.1-201ENST00000561511 1773 ntBASIC21.1■□□□□ 0.97
COPB1P53618 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
COPB1P53618 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COPB1P53618 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.1■□□□□ 0.97
COPB1P53618 SLC29A4P1-201ENST00000398760 971 ntBASIC21.1■□□□□ 0.97
COPB1P53618 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.1■□□□□ 0.97
COPB1P53618 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.1■□□□□ 0.97
COPB1P53618 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.1■□□□□ 0.97
COPB1P53618 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.1■□□□□ 0.97
COPB1P53618 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.1■□□□□ 0.97
COPB1P53618 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COPB1P53618 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COPB1P53618 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COPB1P53618 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.1■□□□□ 0.97
COPB1P53618 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
COPB1P53618 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COPB1P53618 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COPB1P53618 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.1■□□□□ 0.97
COPB1P53618 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COPB1P53618 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
COPB1P53618 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COPB1P53618 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COPB1P53618 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms