RNA–Protein interactions for RNA: ENST00000354679.3

HCFC1R1-202, Transcript of host cell factor C1 regulator 1, humanhuman

TSL 2 BASIC

Gene HCFC1R1, Length 765 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1R1-202ENST00000354679 NISCHQ9Y2I1 1504 aa49.53■■■■■ 5.52
HCFC1R1-202ENST00000354679 CCDC180Q9P1Z9 1646 aa44.13■■■■■ 4.65
HCFC1R1-202ENST00000354679 ABCC9O60706 1549 aa43.42■■■■■ 4.54
HCFC1R1-202ENST00000354679 RB1CC1Q8TDY2 1594 aa41.66■■■■■ 4.26
HCFC1R1-202ENST00000354679 NACADO15069 1562 aa41.54■■■■■ 4.24
HCFC1R1-202ENST00000354679 DCAF8L2P0C7V8 631 aa41.48■■■■■ 4.23
HCFC1R1-202ENST00000354679 MYO15BQ96JP2 1530 aa41.22■■■■■ 4.19
HCFC1R1-202ENST00000354679 ZCCHC6Q5VYS8 1495 aaKnown RBP41.21■■■■■ 4.19
HCFC1R1-202ENST00000354679 DCAF1Q9Y4B6 1507 aa40.96■■■■■ 4.15
HCFC1R1-202ENST00000354679 UNC13AQ9UPW8 1703 aa40.68■■■■■ 4.1
HCFC1R1-202ENST00000354679 PABPN1Q86U42 306 aaKnown RBP eCLIP40.53■■■■■ 4.08
HCFC1R1-202ENST00000354679 BICRAQ9NZM4 1560 aa40.4■■■■■ 4.06
HCFC1R1-202ENST00000354679 SCRIBQ14160 1630 aa40.27■■■■■ 4.04
HCFC1R1-202ENST00000354679 DNAJC5BQ9UF47 199 aa40.05■■■■■ 4
HCFC1R1-202ENST00000354679 SHROOM4Q9ULL8 1493 aa39.96■■■■□ 3.99
HCFC1R1-202ENST00000354679 EIF4G1Q04637 1599 aaKnown RBP39.36■■■■□ 3.89
HCFC1R1-202ENST00000354679 CC2D2AQ9P2K1 1620 aa39.25■■■■□ 3.87
HCFC1R1-202ENST00000354679 CECR2Q9BXF3 1484 aa39.05■■■■□ 3.84
HCFC1R1-202ENST00000354679 SMARCA4P51532 1647 aa38.49■■■■□ 3.75
HCFC1R1-202ENST00000354679 BAZ1AQ9NRL2 1556 aaPredicted RBP38.4■■■■□ 3.74
HCFC1R1-202ENST00000354679 NCAPD3P42695 1498 aa38.34■■■■□ 3.73
HCFC1R1-202ENST00000354679 ATAD2BQ9ULI0 1458 aa38.34■■■■□ 3.73
HCFC1R1-202ENST00000354679 SMARCA2P51531 1590 aa38.27■■■■□ 3.72
HCFC1R1-202ENST00000354679 MROH2BQ7Z745 1585 aa38.17■■■■□ 3.7
HCFC1R1-202ENST00000354679 HMGXB3Q12766 1538 aa38.14■■■■□ 3.7
HCFC1R1-202ENST00000354679 PEG3Q9GZU2 1588 aa38.1■■■■□ 3.69
HCFC1R1-202ENST00000354679 BAZ1BQ9UIG0 1483 aaKnown RBP38.02■■■■□ 3.68
HCFC1R1-202ENST00000354679 WIZO95785 1651 aa37.74■■■■□ 3.63
HCFC1R1-202ENST00000354679 RSF1Q96T23 1441 aaPredicted RBP37.65■■■■□ 3.62
HCFC1R1-202ENST00000354679 NESP48681 1621 aa37.5■■■■□ 3.59
HCFC1R1-202ENST00000354679 ERCC6Q03468 1493 aa37.45■■■■□ 3.59
HCFC1R1-202ENST00000354679 LAMC3Q9Y6N6 1575 aa37.37■■■■□ 3.57
HCFC1R1-202ENST00000354679 TOP2AP11388 1531 aaKnown RBP37.34■■■■□ 3.57
HCFC1R1-202ENST00000354679 CADPSQ9ULU8 1353 aa37.22■■■■□ 3.55
HCFC1R1-202ENST00000354679 PDS5BQ9NTI5 1447 aa37.13■■■■□ 3.53
HCFC1R1-202ENST00000354679 CUX2O14529 1486 aa37.13■■■■□ 3.53
HCFC1R1-202ENST00000354679 KIF21AQ7Z4S6 1674 aa37.04■■■■□ 3.52
HCFC1R1-202ENST00000354679 THOC2Q8NI27 1593 aaKnown RBP36.99■■■■□ 3.51
HCFC1R1-202ENST00000354679 CFTRP13569 1480 aa36.94■■■■□ 3.5
HCFC1R1-202ENST00000354679 CCDC88BA6NC98 1476 aa36.89■■■■□ 3.5
HCFC1R1-202ENST00000354679 FANCD2Q9BXW9 1451 aa36.8■■■■□ 3.48
HCFC1R1-202ENST00000354679 MRC2Q9UBG0 1479 aa36.77■■■■□ 3.48
HCFC1R1-202ENST00000354679 CEP164Q9UPV0 1460 aa36.77■■■■□ 3.48
HCFC1R1-202ENST00000354679 WDR62O43379 1518 aa36.65■■■■□ 3.46
HCFC1R1-202ENST00000354679 PRDM2Q13029 1718 aa36.62■■■■□ 3.45
HCFC1R1-202ENST00000354679 SUPT5HO00267 1087 aaKnown RBP36.54■■■■□ 3.44
HCFC1R1-202ENST00000354679 URB2Q14146 1524 aaKnown RBP36.44■■■■□ 3.42
HCFC1R1-202ENST00000354679 DNAJC5Q9H3Z4 198 aa36.25■■■■□ 3.39
HCFC1R1-202ENST00000354679 TOPBP1Q92547 1522 aa36.18■■■■□ 3.38
HCFC1R1-202ENST00000354679 ABCC8Q09428 1581 aa36.15■■■■□ 3.38
HCFC1R1-202ENST00000354679 DNMBPQ6XZF7 1577 aa36.12■■■■□ 3.37
HCFC1R1-202ENST00000354679 IFT140Q96RY7 1462 aa36.02■■■■□ 3.36
HCFC1R1-202ENST00000354679 ZNF608Q9ULD9 1512 aaPredicted RBP35.88■■■■□ 3.33
HCFC1R1-202ENST00000354679 POLA1P09884 1462 aaPredicted RBP35.86■■■■□ 3.33
HCFC1R1-202ENST00000354679 CUX1P39880 1505 aa35.83■■■■□ 3.33
HCFC1R1-202ENST00000354679 TARBP1Q13395 1621 aaKnown RBP35.79■■■■□ 3.32
HCFC1R1-202ENST00000354679 FGD5Q6ZNL6 1462 aa35.74■■■■□ 3.31
HCFC1R1-202ENST00000354679 EIF4G3O43432 1585 aaKnown RBP35.72■■■■□ 3.31
HCFC1R1-202ENST00000354679 RAD54L2Q9Y4B4 1467 aa35.72■■■■□ 3.31
HCFC1R1-202ENST00000354679 SOGA1O94964 1423 aa35.7■■■■□ 3.31
HCFC1R1-202ENST00000354679 AQRO60306 1485 aaKnown RBP eCLIP35.65■■■■□ 3.32e-10■■■■■ 40.6
HCFC1R1-202ENST00000354679 TDRD9Q8NDG6 1382 aaKnown RBP35.54■■■■□ 3.28
HCFC1R1-202ENST00000354679 OSCARQ8IYS5 282 aa35.54■■■■□ 3.28
HCFC1R1-202ENST00000354679 WRNQ14191 1432 aaPredicted RBP eCLIP35.51■■■■□ 3.28
HCFC1R1-202ENST00000354679 WDR97A6NE52 1622 aa35.5■■■■□ 3.27
HCFC1R1-202ENST00000354679 TOP2BQ02880 1626 aa35.45■■■■□ 3.27
HCFC1R1-202ENST00000354679 BIVM-ERCC5R4GMW8 1640 aa35.44■■■■□ 3.26
HCFC1R1-202ENST00000354679 SYNJ1O43426 1573 aa35.43■■■■□ 3.26
HCFC1R1-202ENST00000354679 ABCA10Q8WWZ4 1543 aa35.38■■■■□ 3.25
HCFC1R1-202ENST00000354679 GRIN2BQ13224 1484 aa35.32■■■■□ 3.24
HCFC1R1-202ENST00000354679 SNAPC4Q5SXM2 1469 aa35.31■■■■□ 3.24
HCFC1R1-202ENST00000354679 CHD1O14646 1710 aa35.3■■■■□ 3.24
HCFC1R1-202ENST00000354679 GAPVD1Q14C86 1478 aa35.29■■■■□ 3.24
HCFC1R1-202ENST00000354679 FBLN2P98095 1184 aa35.27■■■■□ 3.24
HCFC1R1-202ENST00000354679 ABCA5Q8WWZ7 1642 aa35.26■■■■□ 3.24
HCFC1R1-202ENST00000354679 MAGI1Q96QZ7 1491 aaPredicted RBP35.25■■■■□ 3.23
HCFC1R1-202ENST00000354679 PBRM1Q86U86 1689 aa35.22■■■■□ 3.23
HCFC1R1-202ENST00000354679 CHMP7Q8WUX9 453 aaPredicted RBP35.13■■■■□ 3.21
HCFC1R1-202ENST00000354679 SYNJ2O15056 1496 aa35.12■■■■□ 3.21
HCFC1R1-202ENST00000354679 RIMBP3CA6NJZ7 1639 aa35■■■■□ 3.19
HCFC1R1-202ENST00000354679 RIMBP3BA6NNM3 1639 aa35■■■■□ 3.19
HCFC1R1-202ENST00000354679 RIMBP3Q9UFD9 1639 aa35■■■■□ 3.19
HCFC1R1-202ENST00000354679 TRIM41Q8WV44 630 aa34.99■■■■□ 3.19
HCFC1R1-202ENST00000354679 ARHGEF11O15085 1522 aa34.98■■■■□ 3.19
HCFC1R1-202ENST00000354679 ERICH3Q5RHP9 1530 aa34.96■■■■□ 3.19
HCFC1R1-202ENST00000354679 ADAMTS12P58397 1594 aa34.95■■■■□ 3.18
HCFC1R1-202ENST00000354679 CLASP1Q7Z460 1538 aa34.93■■■■□ 3.18
HCFC1R1-202ENST00000354679 FHAD1B1AJZ9 1412 aa34.89■■■■□ 3.18
HCFC1R1-202ENST00000354679 GRIN2AQ12879 1464 aa34.87■■■■□ 3.17
HCFC1R1-202ENST00000354679 KIF27Q86VH2 1401 aa34.79■■■■□ 3.16
HCFC1R1-202ENST00000354679 NUP160Q12769 1436 aa34.72■■■■□ 3.15
HCFC1R1-202ENST00000354679 CEP170Q5SW79 1584 aa34.7■■■■□ 3.14
HCFC1R1-202ENST00000354679 ARAP1Q96P48 1450 aa34.69■■■■□ 3.14
HCFC1R1-202ENST00000354679 IGF1RP08069 1367 aa34.67■■■■□ 3.14
HCFC1R1-202ENST00000354679 CYB5RLQ6IPT4 315 aa34.66■■■■□ 3.14
HCFC1R1-202ENST00000354679 CUL7Q14999 1698 aa34.59■■■■□ 3.13
HCFC1R1-202ENST00000354679 SHROOM2Q13796 1616 aa34.48■■■■□ 3.11
HCFC1R1-202ENST00000354679 CARMIL1Q5VZK9 1371 aa34.47■■■■□ 3.11
HCFC1R1-202ENST00000354679 RUSC2Q8N2Y8 1516 aa34.44■■■■□ 3.1
HCFC1R1-202ENST00000354679 ERCC6L2Q5T890 1561 aa34.43■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms