RNA–Protein interactions for RNA: ENST00000272133.3

CNIH3-201, Transcript of cornichon family AMPA receptor auxiliary protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNIH3, Length 2,558 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNIH3-201ENST00000272133 NISCHQ9Y2I1 1504 aa37.46■■■■□ 3.59
CNIH3-201ENST00000272133 SHROOM4Q9ULL8 1493 aa32.36■■■□□ 2.77
CNIH3-201ENST00000272133 CCDC180Q9P1Z9 1646 aa32.25■■■□□ 2.75
CNIH3-201ENST00000272133 SUPT5HO00267 1087 aaKnown RBP31.96■■■□□ 2.71
CNIH3-201ENST00000272133 ZCCHC6Q5VYS8 1495 aaKnown RBP31.6■■■□□ 2.65
CNIH3-201ENST00000272133 MYO15BQ96JP2 1530 aa31.37■■■□□ 2.61
CNIH3-201ENST00000272133 CHIC1Q5VXU3 224 aa31.26■■■□□ 2.6
CNIH3-201ENST00000272133 HRCP23327 699 aa31.24■■■□□ 2.59
CNIH3-201ENST00000272133 DCAF8L2P0C7V8 631 aa31.01■■■□□ 2.55
CNIH3-201ENST00000272133 PCGF6Q9BYE7 350 aa30.93■■■□□ 2.54
CNIH3-201ENST00000272133 DCAF1Q9Y4B6 1507 aa30.81■■■□□ 2.52
CNIH3-201ENST00000272133 PPARGC1BQ86YN6 1023 aaKnown RBP30.63■■■□□ 2.49
CNIH3-201ENST00000272133 LOC105371045A0A1W2PR82 267 aa30.45■■■□□ 2.47
CNIH3-201ENST00000272133 ABCC9O60706 1549 aa30.29■■■□□ 2.44
CNIH3-201ENST00000272133 TRIM26Q12899 539 aaPredicted RBP30.1■■■□□ 2.41
CNIH3-201ENST00000272133 SCRIBQ14160 1630 aa29.99■■■□□ 2.39
CNIH3-201ENST00000272133 NACADO15069 1562 aa29.92■■■□□ 2.38
CNIH3-201ENST00000272133 RSF1Q96T23 1441 aaPredicted RBP29.72■■■□□ 2.35
CNIH3-201ENST00000272133 TRIM41Q8WV44 630 aa29.64■■■□□ 2.34
CNIH3-201ENST00000272133 ZEB1P37275 1124 aaPredicted RBP29.61■■■□□ 2.33
CNIH3-201ENST00000272133 RB1CC1Q8TDY2 1594 aa29.55■■■□□ 2.32
CNIH3-201ENST00000272133 FAM9AQ8IZU1 332 aaPredicted RBP29.54■■■□□ 2.32
CNIH3-201ENST00000272133 EHMT2Q96KQ7 1210 aa29.37■■■□□ 2.29
CNIH3-201ENST00000272133 CECR2Q9BXF3 1484 aa29.24■■■□□ 2.27
CNIH3-201ENST00000272133 SCAF1Q9H7N4 1312 aaKnown RBP29.2■■■□□ 2.26
CNIH3-201ENST00000272133 UNC13AQ9UPW8 1703 aa29.19■■■□□ 2.26
CNIH3-201ENST00000272133 MROH2BQ7Z745 1585 aa29.08■■■□□ 2.25
CNIH3-201ENST00000272133 PELP1Q8IZL8 1130 aaKnown RBP29.08■■■□□ 2.24
CNIH3-201ENST00000272133 WIZO95785 1651 aa28.93■■■□□ 2.22
CNIH3-201ENST00000272133 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.91■■■□□ 2.22
CNIH3-201ENST00000272133 BICRAQ9NZM4 1560 aa28.83■■■□□ 2.21
CNIH3-201ENST00000272133 CCER1Q8TC90 406 aaPredicted RBP28.81■■■□□ 2.2
CNIH3-201ENST00000272133 BAZ1AQ9NRL2 1556 aaPredicted RBP28.81■■■□□ 2.2
CNIH3-201ENST00000272133 PABPN1Q86U42 306 aaKnown RBP eCLIP28.78■■■□□ 2.2
CNIH3-201ENST00000272133 EIF4G1Q04637 1599 aaKnown RBP28.73■■■□□ 2.19
CNIH3-201ENST00000272133 SMARCA4P51532 1647 aa28.68■■■□□ 2.18
CNIH3-201ENST00000272133 ACIN1Q9UKV3 1341 aaKnown RBP28.67■■■□□ 2.18
CNIH3-201ENST00000272133 NEUROD1Q13562 356 aa28.64■■■□□ 2.18
CNIH3-201ENST00000272133 TTBK1Q5TCY1 1321 aaPredicted RBP28.57■■■□□ 2.16
CNIH3-201ENST00000272133 DIEXFQ68CQ4 756 aaKnown RBP28.55■■■□□ 2.16
CNIH3-201ENST00000272133 ABCC8Q09428 1581 aa28.53■■■□□ 2.16
CNIH3-201ENST00000272133 CCDC88BA6NC98 1476 aa28.5■■■□□ 2.15
CNIH3-201ENST00000272133 WRNQ14191 1432 aaPredicted RBP eCLIP28.5■■■□□ 2.15
CNIH3-201ENST00000272133 CEP162Q5TB80 1403 aa28.46■■■□□ 2.15
CNIH3-201ENST00000272133 TOP2AP11388 1531 aaKnown RBP28.44■■■□□ 2.14
CNIH3-201ENST00000272133 GTF3C3Q9Y5Q9 886 aa28.4■■■□□ 2.14
CNIH3-201ENST00000272133 CENPBP07199 599 aaPredicted RBP28.38■■■□□ 2.13
CNIH3-201ENST00000272133 SOGA1O94964 1423 aa28.36■■■□□ 2.13
CNIH3-201ENST00000272133 TNIKQ9UKE5 1360 aa28.3■■■□□ 2.12
CNIH3-201ENST00000272133 SMARCA2P51531 1590 aa28.29■■■□□ 2.12
CNIH3-201ENST00000272133 PEG3Q9GZU2 1588 aa28.22■■■□□ 2.11
CNIH3-201ENST00000272133 RUSC2Q8N2Y8 1516 aa28.21■■■□□ 2.11
CNIH3-201ENST00000272133 UBTFP17480 764 aaKnown RBP28.18■■■□□ 2.1
CNIH3-201ENST00000272133 CSRNP3Q8WYN3 585 aa28.18■■■□□ 2.1
CNIH3-201ENST00000272133 ZNF316A6NFI3 1004 aaPredicted RBP28.15■■■□□ 2.1
CNIH3-201ENST00000272133 EEA1Q15075 1411 aa28.14■■■□□ 2.09
CNIH3-201ENST00000272133 ATAD2BQ9ULI0 1458 aa28.09■■■□□ 2.09
CNIH3-201ENST00000272133 GOLGA3Q08378 1498 aa28.06■■■□□ 2.08
CNIH3-201ENST00000272133 YTHDC1Q96MU7 727 aaKnown RBP28■■■□□ 2.07
CNIH3-201ENST00000272133 BAZ1BQ9UIG0 1483 aaKnown RBP27.93■■■□□ 2.06
CNIH3-201ENST00000272133 HNRNPUL2Q1KMD3 747 aaKnown RBP27.93■■■□□ 2.06
CNIH3-201ENST00000272133 MIER1Q8N108 512 aa27.89■■■□□ 2.05
CNIH3-201ENST00000272133 CEP164Q9UPV0 1460 aa27.82■■■□□ 2.04
CNIH3-201ENST00000272133 CLIP1P30622 1438 aa27.79■■■□□ 2.04
CNIH3-201ENST00000272133 SYNJ1O43426 1573 aa27.78■■■□□ 2.04
CNIH3-201ENST00000272133 KIF21BO75037 1637 aa27.78■■■□□ 2.04
CNIH3-201ENST00000272133 VPS8Q8N3P4 1428 aa27.72■■■□□ 2.03
CNIH3-201ENST00000272133 MYT1Q01538 1121 aa27.7■■■□□ 2.03
CNIH3-201ENST00000272133 NCAPD3P42695 1498 aa27.68■■■□□ 2.02
CNIH3-201ENST00000272133 HMGXB3Q12766 1538 aa27.63■■■□□ 2.01
CNIH3-201ENST00000272133 APLP2Q06481 763 aa27.62■■■□□ 2.01
CNIH3-201ENST00000272133 RAPGEF2Q9Y4G8 1499 aa27.62■■■□□ 2.01
CNIH3-201ENST00000272133 RANGAP1P46060 587 aaPredicted RBP27.6■■■□□ 2.01
CNIH3-201ENST00000272133 DHX57Q6P158 1386 aaKnown RBP27.41■■□□□ 1.98
CNIH3-201ENST00000272133 CLSPNQ9HAW4 1339 aa27.36■■□□□ 1.97
CNIH3-201ENST00000272133 CC2D2AQ9P2K1 1620 aa27.35■■□□□ 1.97
CNIH3-201ENST00000272133 TOP2BQ02880 1626 aa27.32■■□□□ 1.96
CNIH3-201ENST00000272133 ARAP1Q96P48 1450 aa27.29■■□□□ 1.96
CNIH3-201ENST00000272133 KANK4Q5T7N3 995 aaPredicted RBP27.28■■□□□ 1.96
CNIH3-201ENST00000272133 CFTRP13569 1480 aa27.26■■□□□ 1.95
CNIH3-201ENST00000272133 ERICH3Q5RHP9 1530 aa27.22■■□□□ 1.95
CNIH3-201ENST00000272133 PRXQ9BXM0 1461 aa27.22■■□□□ 1.95
CNIH3-201ENST00000272133 SUPT16HQ9Y5B9 1047 aaKnown RBP27.21■■□□□ 1.95
CNIH3-201ENST00000272133 BIVM-ERCC5R4GMW8 1640 aa27.19■■□□□ 1.94
CNIH3-201ENST00000272133 RRBP1Q9P2E9 1410 aaKnown RBP27.15■■□□□ 1.94
CNIH3-201ENST00000272133 CUX1P39880 1505 aa27.12■■□□□ 1.93
CNIH3-201ENST00000272133 PRDM2Q13029 1718 aa27.09■■□□□ 1.93
CNIH3-201ENST00000272133 CADPSQ9ULU8 1353 aa27.06■■□□□ 1.92
CNIH3-201ENST00000272133 CUX2O14529 1486 aa27.05■■□□□ 1.92
CNIH3-201ENST00000272133 CCNB3Q8WWL7 1395 aa27.03■■□□□ 1.92
CNIH3-201ENST00000272133 ITGAEP38570 1179 aa27.01■■□□□ 1.91
CNIH3-201ENST00000272133 ARHGAP35Q9NRY4 1499 aa26.96■■□□□ 1.91
CNIH3-201ENST00000272133 KIF27Q86VH2 1401 aa26.95■■□□□ 1.91
CNIH3-201ENST00000272133 KCNH8Q96L42 1107 aa26.94■■□□□ 1.9
CNIH3-201ENST00000272133 TSHZ2Q9NRE2 1034 aa26.91■■□□□ 1.9
CNIH3-201ENST00000272133 RAB3GAP2Q9H2M9 1393 aa26.89■■□□□ 1.9
CNIH3-201ENST00000272133 MAPKBP1O60336 1514 aa26.88■■□□□ 1.89
CNIH3-201ENST00000272133 NESP48681 1621 aa26.82■■□□□ 1.88
CNIH3-201ENST00000272133 DNAJC5BQ9UF47 199 aa26.82■■□□□ 1.88
CNIH3-201ENST00000272133 FANCD2Q9BXW9 1451 aa26.78■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms