Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 AP1G2-225ENST00000556743 1456 ntTSL 1 (best)19.98■□□□□ 0.792e-7■□□□□ 10.3
U2AF1Q01081 AP1G2-206ENST00000553629 1301 ntTSL 1 (best)18.69■□□□□ 0.582e-7■□□□□ 10.3
U2AF1Q01081 RBM39-244ENST00000615771 686 ntTSL 57.38□□□□□ -1.232e-18■□□□□ 10.3
U2AF1Q01081 RBM39-227ENST00000470563 384 ntTSL 37.21□□□□□ -1.262e-18■□□□□ 10.3
U2AF1Q01081 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.853e-18■□□□□ 10.2
U2AF1Q01081 RPS24-209ENST00000476545 815 ntTSL 317.42■□□□□ 0.383e-18■□□□□ 10.2
U2AF1Q01081 RPS24-204ENST00000440692 2814 ntTSL 3 BASIC15.66■□□□□ 0.13e-18■□□□□ 10.2
U2AF1Q01081 RPS24-212ENST00000482069 539 ntTSL 314.98□□□□□ -0.013e-18■□□□□ 10.2
U2AF1Q01081 RPS24-206ENST00000465692 778 ntTSL 213.74□□□□□ -0.213e-18■□□□□ 10.2
U2AF1Q01081 RPS24-211ENST00000480662 711 ntTSL 212.17□□□□□ -0.463e-18■□□□□ 10.2
U2AF1Q01081 RPS24-202ENST00000372360 510 ntAPPRIS P4 TSL 1 (best) BASIC11.01□□□□□ -0.653e-18■□□□□ 10.2
U2AF1Q01081 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC7.92□□□□□ -1.143e-18■□□□□ 10.2
U2AF1Q01081 RPS24-213ENST00000485708 544 ntTSL 27.25□□□□□ -1.253e-18■□□□□ 10.2
U2AF1Q01081 SRRM2-212ENST00000572952 1118 ntTSL 217.48■□□□□ 0.393e-14■□□□□ 10.2
U2AF1Q01081 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC27.05■■□□□ 1.927e-10■□□□□ 10.2
U2AF1Q01081 TRIP12-202ENST00000343290 583 ntTSL 324.61■■□□□ 1.531e-7■□□□□ 10.2
U2AF1Q01081 CDK5RAP3-207ENST00000578134 831 ntTSL 322.54■■□□□ 1.27e-10■□□□□ 10.2
U2AF1Q01081 ABCC3-216ENST00000515585 484 ntTSL 318.3■□□□□ 0.521e-7■□□□□ 10.2
U2AF1Q01081 TRIP12-205ENST00000409677 1507 ntTSL 2 BASIC17.43■□□□□ 0.381e-7■□□□□ 10.2
U2AF1Q01081 CAD-203ENST00000428460 953 ntTSL 517.25■□□□□ 0.357e-10■□□□□ 10.2
U2AF1Q01081 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC17.21■□□□□ 0.357e-10■□□□□ 10.2
U2AF1Q01081 CAD-201ENST00000264705 7265 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.17e-10■□□□□ 10.2
U2AF1Q01081 CDK5RAP3-204ENST00000577664 568 ntTSL 414.79□□□□□ -0.047e-10■□□□□ 10.2
U2AF1Q01081 CDK5RAP3-227ENST00000583352 901 ntTSL 312.91□□□□□ -0.347e-10■□□□□ 10.2
U2AF1Q01081 CDK5RAP3-208ENST00000578525 564 ntTSL 412.13□□□□□ -0.477e-10■□□□□ 10.2
U2AF1Q01081 TRIP12-209ENST00000435716 603 ntTSL 311.14□□□□□ -0.631e-7■□□□□ 10.2
U2AF1Q01081 SKIV2L2-201ENST00000230640 4192 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.652e-9■□□□□ 10.2
U2AF1Q01081 SKIV2L2-203ENST00000503165 571 ntTSL 59.89□□□□□ -0.832e-9■□□□□ 10.2
U2AF1Q01081 SKIV2L2-205ENST00000504997 500 ntTSL 47.85□□□□□ -1.152e-9■□□□□ 10.2
U2AF1Q01081 SKIV2L2-202ENST00000502953 557 ntTSL 46.63□□□□□ -1.352e-9■□□□□ 10.2
U2AF1Q01081 CHD2-214ENST00000628181 545 ntTSL 55.91□□□□□ -1.462e-9■□□□□ 10.2
U2AF1Q01081 SKIV2L2-207ENST00000506750 3271 ntTSL 25.37□□□□□ -1.552e-9■□□□□ 10.2
U2AF1Q01081 SKIV2L2-206ENST00000505565 695 ntTSL 33.87□□□□□ -1.792e-9■□□□□ 10.2
U2AF1Q01081 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.351e-6■□□□□ 10.2
U2AF1Q01081 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC32.66■■■□□ 2.821e-6■□□□□ 10.2
U2AF1Q01081 UBE2D2-204ENST00000505007 1170 ntTSL 325.67■■□□□ 1.71e-6■□□□□ 10.2
U2AF1Q01081 SSU72-204ENST00000378726 2238 ntTSL 225.55■■□□□ 1.681e-6■□□□□ 10.2
U2AF1Q01081 HMGN1-219ENST00000491183 527 ntTSL 224.12■■□□□ 1.451e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC23.87■■□□□ 1.411e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-204ENST00000431225 1687 ntTSL 523.83■■□□□ 1.41e-6■□□□□ 10.2
U2AF1Q01081 HMGN1-212ENST00000479586 841 ntTSL 223.11■■□□□ 1.291e-6■□□□□ 10.2
U2AF1Q01081 HMGN1-209ENST00000463631 583 ntTSL 323.08■■□□□ 1.291e-6■□□□□ 10.2
U2AF1Q01081 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.261e-6■□□□□ 10.2
U2AF1Q01081 TRIM28-215ENST00000601150 915 ntTSL 322.55■■□□□ 1.21e-6■□□□□ 10.2
U2AF1Q01081 HMGN1-214ENST00000482733 701 ntTSL 222.18■■□□□ 1.141e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.991e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC20.99■□□□□ 0.951e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-205ENST00000433366 5773 ntTSL 520.94■□□□□ 0.941e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.721e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC19.1■□□□□ 0.651e-6■□□□□ 10.2
U2AF1Q01081 TRIM28-212ENST00000597995 702 ntTSL 216.69■□□□□ 0.261e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-214ENST00000603187 3713 ntTSL 1 (best)16.66■□□□□ 0.261e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-212ENST00000492395 4490 ntTSL 1 (best)15.98■□□□□ 0.151e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-202ENST00000412198 3611 ntTSL 215.95■□□□□ 0.141e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-222ENST00000604754 3369 ntTSL 1 (best)15.02□□□□□ -0.011e-6■□□□□ 10.2
U2AF1Q01081 UBE2D2-208ENST00000511725 656 ntTSL 2 BASIC13.91□□□□□ -0.181e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-203ENST00000425051 594 ntTSL 513.42□□□□□ -0.261e-6■□□□□ 10.2
U2AF1Q01081 ZSWIM8-211ENST00000489234 681 ntTSL 512.03□□□□□ -0.481e-6■□□□□ 10.2
U2AF1Q01081 UBE2D2-206ENST00000510470 256 ntTSL 210.34□□□□□ -0.751e-6■□□□□ 10.2
U2AF1Q01081 UBE2D2-203ENST00000398734 901 ntTSL 59.7□□□□□ -0.861e-6■□□□□ 10.2
U2AF1Q01081 UBE2D2-207ENST00000511691 543 ntTSL 27.68□□□□□ -1.181e-6■□□□□ 10.2
U2AF1Q01081 FNBP4-203ENST00000525316 412 ntTSL 35.29□□□□□ -1.561e-6■□□□□ 10.2
U2AF1Q01081 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.62□□□□□ -1.671e-6■□□□□ 10.2
U2AF1Q01081 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.681e-6■□□□□ 10.2
U2AF1Q01081 SPTBN1-201ENST00000333896 9075 ntTSL 1 (best) BASIC12.3□□□□□ -0.441e-6■□□□□ 10.2
U2AF1Q01081 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.879e-7■□□□□ 10.2
U2AF1Q01081 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.66□□□□□ -2.31e-323■□□□□ 10.2
U2AF1Q01081 NCAPG2-201ENST00000356309 3930 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.017e-7■□□□□ 10.2
U2AF1Q01081 NCAPG2-203ENST00000409423 3957 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.47e-7■□□□□ 10.2
U2AF1Q01081 NCAPG2-206ENST00000467785 3276 ntTSL 1 (best)10.92□□□□□ -0.667e-7■□□□□ 10.2
U2AF1Q01081 NCAPG2-205ENST00000441982 2926 ntTSL 210.55□□□□□ -0.727e-7■□□□□ 10.2
U2AF1Q01081 NCAPG2-204ENST00000432615 4134 ntTSL 510.33□□□□□ -0.767e-7■□□□□ 10.2
U2AF1Q01081 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC8.14□□□□□ -1.117e-7■□□□□ 10.2
U2AF1Q01081 ST7-215ENST00000438863 1005 ntTSL 535.69■■■■□ 3.31e-8■□□□□ 10.2
U2AF1Q01081 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.251e-8■□□□□ 10.2
U2AF1Q01081 ST7-205ENST00000393446 2114 ntTSL 5 BASIC35.18■■■■□ 3.221e-8■□□□□ 10.2
U2AF1Q01081 ST7-202ENST00000323984 2142 ntTSL 5 BASIC35.01■■■■□ 3.21e-8■□□□□ 10.2
U2AF1Q01081 ST7-207ENST00000393449 2127 ntTSL 5 BASIC35.01■■■■□ 3.21e-8■□□□□ 10.2
U2AF1Q01081 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC28■■■□□ 2.071e-8■□□□□ 10.2
U2AF1Q01081 ST7-226ENST00000487459 1681 ntTSL 516.51■□□□□ 0.231e-8■□□□□ 10.2
U2AF1Q01081 ST7-217ENST00000446490 1694 ntTSL 510.35□□□□□ -0.751e-8■□□□□ 10.2
U2AF1Q01081 ST7-213ENST00000432298 1956 ntTSL 2 BASIC10.22□□□□□ -0.771e-8■□□□□ 10.2
U2AF1Q01081 ST7-219ENST00000462544 550 ntTSL 49.43□□□□□ -0.91e-8■□□□□ 10.2
U2AF1Q01081 ST7-216ENST00000443979 805 ntTSL 59.19□□□□□ -0.941e-8■□□□□ 10.2
U2AF1Q01081 ST7-214ENST00000434836 579 ntTSL 48.95□□□□□ -0.981e-8■□□□□ 10.2
U2AF1Q01081 ST7-223ENST00000467538 565 ntTSL 58.59□□□□□ -1.031e-8■□□□□ 10.2
U2AF1Q01081 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC8.58□□□□□ -1.041e-8■□□□□ 10.2
U2AF1Q01081 ST7-224ENST00000477742 780 ntTSL 47.87□□□□□ -1.151e-8■□□□□ 10.2
U2AF1Q01081 ST7-203ENST00000393443 2360 ntTSL 2 BASIC7.64□□□□□ -1.191e-8■□□□□ 10.2
U2AF1Q01081 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC7.15□□□□□ -1.271e-8■□□□□ 10.2
U2AF1Q01081 ST7-209ENST00000417919 577 ntTSL 46.47□□□□□ -1.371e-8■□□□□ 10.2
U2AF1Q01081 ST7-218ENST00000449366 542 ntTSL 56.19□□□□□ -1.421e-8■□□□□ 10.2
U2AF1Q01081 ST7-212ENST00000422922 1887 ntTSL 5 BASIC6□□□□□ -1.451e-8■□□□□ 10.2
U2AF1Q01081 ST7-OT4-205ENST00000471110 591 ntTSL 45.89□□□□□ -1.471e-8■□□□□ 10.2
U2AF1Q01081 ST7-211ENST00000421345 531 ntTSL 44.86□□□□□ -1.631e-8■□□□□ 10.2
U2AF1Q01081 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.83□□□□□ -1.641e-8■□□□□ 10.2
U2AF1Q01081 UBAP2L-202ENST00000343815 3411 ntTSL 1 (best) BASIC11.22□□□□□ -0.614e-8■□□□□ 10.2
U2AF1Q01081 UBAP2L-220ENST00000613315 3451 ntTSL 2 BASIC11□□□□□ -0.654e-8■□□□□ 10.2
U2AF1Q01081 UBAP2L-219ENST00000495676 867 ntTSL 36.94□□□□□ -1.34e-8■□□□□ 10.2
U2AF1Q01081 TPM3-209ENST00000368527 569 ntTSL 413.18□□□□□ -0.32e-12■□□□□ 10.2
Retrieved 100 of 10,096 protein–RNA pairs in 227.8 ms