RNA–Protein interactions for RNA: ENST00000491183.5

HMGN1-219, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 527 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-219ENST00000491183 NISCHQ9Y2I1 1504 aa44.65■■■■■ 4.74
HMGN1-219ENST00000491183 CCDC180Q9P1Z9 1646 aa39.86■■■■□ 3.97
HMGN1-219ENST00000491183 ABCC9O60706 1549 aa39.56■■■■□ 3.92
HMGN1-219ENST00000491183 RB1CC1Q8TDY2 1594 aa37.77■■■■□ 3.64
HMGN1-219ENST00000491183 NACADO15069 1562 aa37.61■■■■□ 3.61
HMGN1-219ENST00000491183 DCAF8L2P0C7V8 631 aa37.55■■■■□ 3.6
HMGN1-219ENST00000491183 MYO15BQ96JP2 1530 aa37.21■■■■□ 3.55
HMGN1-219ENST00000491183 ZCCHC6Q5VYS8 1495 aaKnown RBP37.06■■■■□ 3.52
HMGN1-219ENST00000491183 UNC13AQ9UPW8 1703 aa36.97■■■■□ 3.51
HMGN1-219ENST00000491183 PABPN1Q86U42 306 aaKnown RBP eCLIP36.92■■■■□ 3.5
HMGN1-219ENST00000491183 DCAF1Q9Y4B6 1507 aa36.87■■■■□ 3.49
HMGN1-219ENST00000491183 DNAJC5BQ9UF47 199 aa36.87■■■■□ 3.49
HMGN1-219ENST00000491183 BICRAQ9NZM4 1560 aa36.72■■■■□ 3.47
HMGN1-219ENST00000491183 SCRIBQ14160 1630 aa36.36■■■■□ 3.41
HMGN1-219ENST00000491183 SHROOM4Q9ULL8 1493 aa36.17■■■■□ 3.38
HMGN1-219ENST00000491183 EIF4G1Q04637 1599 aaKnown RBP35.75■■■■□ 3.31
HMGN1-219ENST00000491183 CC2D2AQ9P2K1 1620 aa35.75■■■■□ 3.31
HMGN1-219ENST00000491183 CECR2Q9BXF3 1484 aa35.58■■■■□ 3.29
HMGN1-219ENST00000491183 NCAPD3P42695 1498 aa34.75■■■■□ 3.15
HMGN1-219ENST00000491183 SMARCA4P51532 1647 aa34.73■■■■□ 3.15
HMGN1-219ENST00000491183 ATAD2BQ9ULI0 1458 aa34.7■■■■□ 3.15
HMGN1-219ENST00000491183 BAZ1AQ9NRL2 1556 aaPredicted RBP34.6■■■■□ 3.13
HMGN1-219ENST00000491183 SMARCA2P51531 1590 aa34.57■■■■□ 3.13
HMGN1-219ENST00000491183 HMGXB3Q12766 1538 aa34.48■■■■□ 3.11
HMGN1-219ENST00000491183 MROH2BQ7Z745 1585 aa34.43■■■■□ 3.1
HMGN1-219ENST00000491183 PEG3Q9GZU2 1588 aa34.39■■■■□ 3.1
HMGN1-219ENST00000491183 BAZ1BQ9UIG0 1483 aaKnown RBP34.34■■■■□ 3.09
HMGN1-219ENST00000491183 NESP48681 1621 aa34.11■■■■□ 3.05
HMGN1-219ENST00000491183 ERCC6Q03468 1493 aa34.07■■■■□ 3.05
HMGN1-219ENST00000491183 WIZO95785 1651 aa34.03■■■■□ 3.04
HMGN1-219ENST00000491183 CUX2O14529 1486 aa33.9■■■■□ 3.02
HMGN1-219ENST00000491183 LAMC3Q9Y6N6 1575 aa33.88■■■■□ 3.01
HMGN1-219ENST00000491183 RSF1Q96T23 1441 aaPredicted RBP33.84■■■■□ 3.01
HMGN1-219ENST00000491183 CADPSQ9ULU8 1353 aa33.71■■■□□ 2.99
HMGN1-219ENST00000491183 PDS5BQ9NTI5 1447 aa33.67■■■□□ 2.98
HMGN1-219ENST00000491183 KIF21AQ7Z4S6 1674 aa33.64■■■□□ 2.98
HMGN1-219ENST00000491183 THOC2Q8NI27 1593 aaKnown RBP33.64■■■□□ 2.98
HMGN1-219ENST00000491183 TOP2AP11388 1531 aaKnown RBP33.58■■■□□ 2.97
HMGN1-219ENST00000491183 DNAJC5Q9H3Z4 198 aa33.55■■■□□ 2.96
HMGN1-219ENST00000491183 CFTRP13569 1480 aa33.39■■■□□ 2.94
HMGN1-219ENST00000491183 MRC2Q9UBG0 1479 aa33.36■■■□□ 2.93
HMGN1-219ENST00000491183 FANCD2Q9BXW9 1451 aa33.31■■■□□ 2.92
HMGN1-219ENST00000491183 CEP164Q9UPV0 1460 aa33.3■■■□□ 2.92
HMGN1-219ENST00000491183 WDR62O43379 1518 aa33.27■■■□□ 2.92
HMGN1-219ENST00000491183 CCDC88BA6NC98 1476 aa33.25■■■□□ 2.91
HMGN1-219ENST00000491183 PRDM2Q13029 1718 aa33.06■■■□□ 2.88
HMGN1-219ENST00000491183 URB2Q14146 1524 aaKnown RBP33.03■■■□□ 2.88
HMGN1-219ENST00000491183 TOPBP1Q92547 1522 aa32.73■■■□□ 2.83
HMGN1-219ENST00000491183 ABCC8Q09428 1581 aa32.66■■■□□ 2.82
HMGN1-219ENST00000491183 IFT140Q96RY7 1462 aa32.62■■■□□ 2.81
HMGN1-219ENST00000491183 SUPT5HO00267 1087 aaKnown RBP32.62■■■□□ 2.81
HMGN1-219ENST00000491183 DNMBPQ6XZF7 1577 aa32.62■■■□□ 2.81
HMGN1-219ENST00000491183 ZNF608Q9ULD9 1512 aaPredicted RBP32.57■■■□□ 2.8
HMGN1-219ENST00000491183 OSCARQ8IYS5 282 aa32.46■■■□□ 2.79
HMGN1-219ENST00000491183 TARBP1Q13395 1621 aaKnown RBP32.42■■■□□ 2.78
HMGN1-219ENST00000491183 POLA1P09884 1462 aaPredicted RBP32.42■■■□□ 2.78
HMGN1-219ENST00000491183 EIF4G3O43432 1585 aaKnown RBP32.36■■■□□ 2.77
HMGN1-219ENST00000491183 AQRO60306 1485 aaKnown RBP eCLIP32.33■■■□□ 2.775e-16■■■■■ 28.5
HMGN1-219ENST00000491183 RAD54L2Q9Y4B4 1467 aa32.31■■■□□ 2.76
HMGN1-219ENST00000491183 CUX1P39880 1505 aa32.31■■■□□ 2.76
HMGN1-219ENST00000491183 SOGA1O94964 1423 aa32.29■■■□□ 2.76
HMGN1-219ENST00000491183 FGD5Q6ZNL6 1462 aa32.26■■■□□ 2.75
HMGN1-219ENST00000491183 TRIM41Q8WV44 630 aa32.2■■■□□ 2.75
HMGN1-219ENST00000491183 TDRD9Q8NDG6 1382 aaKnown RBP32.19■■■□□ 2.74
HMGN1-219ENST00000491183 CHD1O14646 1710 aa32.08■■■□□ 2.73
HMGN1-219ENST00000491183 WDR97A6NE52 1622 aa32.05■■■□□ 2.72
HMGN1-219ENST00000491183 FBLN2P98095 1184 aa32.03■■■□□ 2.72
HMGN1-219ENST00000491183 RIMBP3CA6NJZ7 1639 aa31.98■■■□□ 2.71
HMGN1-219ENST00000491183 RIMBP3BA6NNM3 1639 aa31.98■■■□□ 2.71
HMGN1-219ENST00000491183 RIMBP3Q9UFD9 1639 aa31.98■■■□□ 2.71
HMGN1-219ENST00000491183 SNAPC4Q5SXM2 1469 aa31.97■■■□□ 2.71
HMGN1-219ENST00000491183 GRIN2BQ13224 1484 aa31.94■■■□□ 2.7
HMGN1-219ENST00000491183 ARHGEF11O15085 1522 aa31.91■■■□□ 2.7
HMGN1-219ENST00000491183 ABCA10Q8WWZ4 1543 aa31.91■■■□□ 2.7
HMGN1-219ENST00000491183 WRNQ14191 1432 aaPredicted RBP eCLIP31.89■■■□□ 2.7
HMGN1-219ENST00000491183 GAPVD1Q14C86 1478 aa31.89■■■□□ 2.7
HMGN1-219ENST00000491183 MAGI1Q96QZ7 1491 aaPredicted RBP31.89■■■□□ 2.7
HMGN1-219ENST00000491183 BIVM-ERCC5R4GMW8 1640 aa31.87■■■□□ 2.69
HMGN1-219ENST00000491183 TOP2BQ02880 1626 aa31.86■■■□□ 2.69
HMGN1-219ENST00000491183 SYNJ1O43426 1573 aa31.85■■■□□ 2.69
HMGN1-219ENST00000491183 CHMP7Q8WUX9 453 aaPredicted RBP31.85■■■□□ 2.69
HMGN1-219ENST00000491183 PBRM1Q86U86 1689 aa31.83■■■□□ 2.69
HMGN1-219ENST00000491183 ABCA5Q8WWZ7 1642 aa31.83■■■□□ 2.69
HMGN1-219ENST00000491183 SYNJ2O15056 1496 aa31.79■■■□□ 2.68
HMGN1-219ENST00000491183 CLASP1Q7Z460 1538 aa31.72■■■□□ 2.67
HMGN1-219ENST00000491183 CYB5RLQ6IPT4 315 aa31.7■■■□□ 2.67
HMGN1-219ENST00000491183 ARAP1Q96P48 1450 aa31.64■■■□□ 2.66
HMGN1-219ENST00000491183 ADAMTS12P58397 1594 aa31.55■■■□□ 2.64
HMGN1-219ENST00000491183 GRIN2AQ12879 1464 aa31.53■■■□□ 2.64
HMGN1-219ENST00000491183 ERICH3Q5RHP9 1530 aa31.5■■■□□ 2.63
HMGN1-219ENST00000491183 FHAD1B1AJZ9 1412 aa31.49■■■□□ 2.63
HMGN1-219ENST00000491183 NUP160Q12769 1436 aa31.42■■■□□ 2.62
HMGN1-219ENST00000491183 CEP170Q5SW79 1584 aa31.42■■■□□ 2.62
HMGN1-219ENST00000491183 ERCC6L2Q5T890 1561 aa31.3■■■□□ 2.6
HMGN1-219ENST00000491183 IGF1RP08069 1367 aa31.25■■■□□ 2.59
HMGN1-219ENST00000491183 KIF27Q86VH2 1401 aa31.24■■■□□ 2.59
HMGN1-219ENST00000491183 SHROOM2Q13796 1616 aa31.24■■■□□ 2.59
HMGN1-219ENST00000491183 TRHP20396 242 aaPredicted RBP31.19■■■□□ 2.58
HMGN1-219ENST00000491183 JPH4Q96JJ6 628 aa31.14■■■□□ 2.58
HMGN1-219ENST00000491183 CUL7Q14999 1698 aa31.1■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms