RNA–Protein interactions for RNA: ENST00000378726.1

SSU72-204, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 2,238 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-204ENST00000378726 NISCHQ9Y2I1 1504 aa43.08■■■■■ 4.49
SSU72-204ENST00000378726 CCDC180Q9P1Z9 1646 aa37.28■■■■□ 3.56
SSU72-204ENST00000378726 ZCCHC6Q5VYS8 1495 aaKnown RBP36.19■■■■□ 3.38
SSU72-204ENST00000378726 DCAF8L2P0C7V8 631 aa35.81■■■■□ 3.32
SSU72-204ENST00000378726 SHROOM4Q9ULL8 1493 aa35.53■■■■□ 3.28
SSU72-204ENST00000378726 DCAF1Q9Y4B6 1507 aa35.52■■■■□ 3.28
SSU72-204ENST00000378726 ABCC9O60706 1549 aa35.29■■■■□ 3.24
SSU72-204ENST00000378726 MYO15BQ96JP2 1530 aa35■■■■□ 3.19
SSU72-204ENST00000378726 NACADO15069 1562 aa34.76■■■■□ 3.15
SSU72-204ENST00000378726 SCRIBQ14160 1630 aa34.48■■■■□ 3.11
SSU72-204ENST00000378726 RB1CC1Q8TDY2 1594 aa34.41■■■■□ 3.1
SSU72-204ENST00000378726 SUPT5HO00267 1087 aaKnown RBP34.37■■■■□ 3.09
SSU72-204ENST00000378726 UNC13AQ9UPW8 1703 aa33.67■■■□□ 2.98
SSU72-204ENST00000378726 RSF1Q96T23 1441 aaPredicted RBP33.58■■■□□ 2.97
SSU72-204ENST00000378726 CECR2Q9BXF3 1484 aa33.54■■■□□ 2.96
SSU72-204ENST00000378726 PABPN1Q86U42 306 aaKnown RBP eCLIP33.45■■■□□ 2.95
SSU72-204ENST00000378726 BICRAQ9NZM4 1560 aa33.39■■■□□ 2.94
SSU72-204ENST00000378726 MROH2BQ7Z745 1585 aa33.33■■■□□ 2.93
SSU72-204ENST00000378726 BAZ1AQ9NRL2 1556 aaPredicted RBP33.21■■■□□ 2.91
SSU72-204ENST00000378726 WIZO95785 1651 aa33.05■■■□□ 2.88
SSU72-204ENST00000378726 SMARCA4P51532 1647 aa33.01■■■□□ 2.88
SSU72-204ENST00000378726 CHIC1Q5VXU3 224 aa32.97■■■□□ 2.87
SSU72-204ENST00000378726 TOP2AP11388 1531 aaKnown RBP32.65■■■□□ 2.82
SSU72-204ENST00000378726 PEG3Q9GZU2 1588 aa32.56■■■□□ 2.8
SSU72-204ENST00000378726 ATAD2BQ9ULI0 1458 aa32.48■■■□□ 2.79
SSU72-204ENST00000378726 CCDC88BA6NC98 1476 aa32.43■■■□□ 2.78
SSU72-204ENST00000378726 SMARCA2P51531 1590 aa32.4■■■□□ 2.78
SSU72-204ENST00000378726 EIF4G1Q04637 1599 aaKnown RBP32.37■■■□□ 2.77
SSU72-204ENST00000378726 BAZ1BQ9UIG0 1483 aaKnown RBP32.31■■■□□ 2.76
SSU72-204ENST00000378726 TRIM41Q8WV44 630 aa32.25■■■□□ 2.75
SSU72-204ENST00000378726 NCAPD3P42695 1498 aa32.15■■■□□ 2.74
SSU72-204ENST00000378726 HMGXB3Q12766 1538 aa32.03■■■□□ 2.72
SSU72-204ENST00000378726 CC2D2AQ9P2K1 1620 aa31.85■■■□□ 2.69
SSU72-204ENST00000378726 ABCC8Q09428 1581 aa31.82■■■□□ 2.68
SSU72-204ENST00000378726 LOC105371045A0A1W2PR82 267 aa31.81■■■□□ 2.68
SSU72-204ENST00000378726 FAM9AQ8IZU1 332 aaPredicted RBP31.73■■■□□ 2.67
SSU72-204ENST00000378726 WRNQ14191 1432 aaPredicted RBP eCLIP31.59■■■□□ 2.65
SSU72-204ENST00000378726 CFTRP13569 1480 aa31.51■■■□□ 2.63
SSU72-204ENST00000378726 CADPSQ9ULU8 1353 aa31.4■■■□□ 2.62
SSU72-204ENST00000378726 SYNJ1O43426 1573 aa31.4■■■□□ 2.62
SSU72-204ENST00000378726 EHMT2Q96KQ7 1210 aa31.34■■■□□ 2.61
SSU72-204ENST00000378726 SOGA1O94964 1423 aa31.34■■■□□ 2.61
SSU72-204ENST00000378726 RUSC2Q8N2Y8 1516 aa31.22■■■□□ 2.59
SSU72-204ENST00000378726 TOP2BQ02880 1626 aa31.22■■■□□ 2.59
SSU72-204ENST00000378726 EEA1Q15075 1411 aa31.21■■■□□ 2.59
SSU72-204ENST00000378726 DNAJC5BQ9UF47 199 aa31.2■■■□□ 2.58
SSU72-204ENST00000378726 CSRNP3Q8WYN3 585 aa31.18■■■□□ 2.58
SSU72-204ENST00000378726 PRDM2Q13029 1718 aa31.16■■■□□ 2.58
SSU72-204ENST00000378726 BIVM-ERCC5R4GMW8 1640 aa31.13■■■□□ 2.57
SSU72-204ENST00000378726 CUX1P39880 1505 aa31.12■■■□□ 2.57
SSU72-204ENST00000378726 HRCP23327 699 aa31.07■■■□□ 2.56
SSU72-204ENST00000378726 NESP48681 1621 aa31.05■■■□□ 2.56
SSU72-204ENST00000378726 FANCD2Q9BXW9 1451 aa31.02■■■□□ 2.56
SSU72-204ENST00000378726 LAMC3Q9Y6N6 1575 aa30.95■■■□□ 2.54
SSU72-204ENST00000378726 PCGF6Q9BYE7 350 aa30.88■■■□□ 2.53
SSU72-204ENST00000378726 UBTFP17480 764 aaKnown RBP30.86■■■□□ 2.53
SSU72-204ENST00000378726 TNIKQ9UKE5 1360 aa30.82■■■□□ 2.52
SSU72-204ENST00000378726 GOLGA3Q08378 1498 aa30.82■■■□□ 2.52
SSU72-204ENST00000378726 CEP164Q9UPV0 1460 aa30.8■■■□□ 2.52
SSU72-204ENST00000378726 PDS5BQ9NTI5 1447 aa30.79■■■□□ 2.52
SSU72-204ENST00000378726 KIF27Q86VH2 1401 aa30.77■■■□□ 2.52
SSU72-204ENST00000378726 FGD5Q6ZNL6 1462 aa30.76■■■□□ 2.51
SSU72-204ENST00000378726 KIF21BO75037 1637 aa30.74■■■□□ 2.51
SSU72-204ENST00000378726 DNMBPQ6XZF7 1577 aa30.71■■■□□ 2.51
SSU72-204ENST00000378726 TOPBP1Q92547 1522 aa30.7■■■□□ 2.5
SSU72-204ENST00000378726 CEP162Q5TB80 1403 aa30.67■■■□□ 2.5
SSU72-204ENST00000378726 RAPGEF2Q9Y4G8 1499 aa30.65■■■□□ 2.5
SSU72-204ENST00000378726 CUX2O14529 1486 aa30.65■■■□□ 2.5
SSU72-204ENST00000378726 PRXQ9BXM0 1461 aa30.61■■■□□ 2.49
SSU72-204ENST00000378726 URB2Q14146 1524 aaKnown RBP30.6■■■□□ 2.49
SSU72-204ENST00000378726 POLA1P09884 1462 aaPredicted RBP30.58■■■□□ 2.49
SSU72-204ENST00000378726 KIF21AQ7Z4S6 1674 aa30.55■■■□□ 2.48
SSU72-204ENST00000378726 RAD54L2Q9Y4B4 1467 aa30.54■■■□□ 2.48
SSU72-204ENST00000378726 IGF1RP08069 1367 aa30.53■■■□□ 2.48
SSU72-204ENST00000378726 ERICH3Q5RHP9 1530 aa30.5■■■□□ 2.47
SSU72-204ENST00000378726 TRIM26Q12899 539 aaPredicted RBP30.47■■■□□ 2.47
SSU72-204ENST00000378726 ABCA10Q8WWZ4 1543 aa30.46■■■□□ 2.47
SSU72-204ENST00000378726 PPARGC1BQ86YN6 1023 aaKnown RBP30.43■■■□□ 2.46
SSU72-204ENST00000378726 CLIP1P30622 1438 aa30.39■■■□□ 2.46
SSU72-204ENST00000378726 CARMIL1Q5VZK9 1371 aa30.37■■■□□ 2.45
SSU72-204ENST00000378726 RANGAP1P46060 587 aaPredicted RBP30.36■■■□□ 2.45
SSU72-204ENST00000378726 MRC2Q9UBG0 1479 aa30.33■■■□□ 2.45
SSU72-204ENST00000378726 TDRD9Q8NDG6 1382 aaKnown RBP30.27■■■□□ 2.44
SSU72-204ENST00000378726 WDR97A6NE52 1622 aa30.22■■■□□ 2.43
SSU72-204ENST00000378726 ERCC6Q03468 1493 aa30.2■■■□□ 2.43
SSU72-204ENST00000378726 GAPVD1Q14C86 1478 aa30.17■■■□□ 2.42
SSU72-204ENST00000378726 TARBP1Q13395 1621 aaKnown RBP30.16■■■□□ 2.42
SSU72-204ENST00000378726 ABCA5Q8WWZ7 1642 aa30.13■■■□□ 2.41
SSU72-204ENST00000378726 VPS8Q8N3P4 1428 aa30.12■■■□□ 2.41
SSU72-204ENST00000378726 WDR62O43379 1518 aa30.12■■■□□ 2.41
SSU72-204ENST00000378726 CUL7Q14999 1698 aa30.08■■■□□ 2.41
SSU72-204ENST00000378726 TTBK1Q5TCY1 1321 aaPredicted RBP30.03■■■□□ 2.4
SSU72-204ENST00000378726 AQRO60306 1485 aaKnown RBP eCLIP30.01■■■□□ 2.47e-6■□□□□ 9.9
SSU72-204ENST00000378726 IFT140Q96RY7 1462 aa30.01■■■□□ 2.4
SSU72-204ENST00000378726 ARAP1Q96P48 1450 aa30.01■■■□□ 2.39
SSU72-204ENST00000378726 ARHGAP35Q9NRY4 1499 aa29.98■■■□□ 2.39
SSU72-204ENST00000378726 APLP2Q06481 763 aa29.98■■■□□ 2.39
SSU72-204ENST00000378726 THOC2Q8NI27 1593 aaKnown RBP29.95■■■□□ 2.38
SSU72-204ENST00000378726 ZNF608Q9ULD9 1512 aaPredicted RBP29.91■■■□□ 2.38
SSU72-204ENST00000378726 GRIN2BQ13224 1484 aa29.87■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms