RNA–Protein interactions for RNA: ENST00000479586.5

HMGN1-212, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 841 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-212ENST00000479586 NISCHQ9Y2I1 1504 aa44.52■■■■■ 4.72
HMGN1-212ENST00000479586 ABCC9O60706 1549 aa40.92■■■■■ 4.14
HMGN1-212ENST00000479586 CCDC180Q9P1Z9 1646 aa40.22■■■■■ 4.03
HMGN1-212ENST00000479586 DNAJC5BQ9UF47 199 aa38.99■■■■□ 3.83
HMGN1-212ENST00000479586 RB1CC1Q8TDY2 1594 aa38.61■■■■□ 3.77
HMGN1-212ENST00000479586 NACADO15069 1562 aa38.17■■■■□ 3.7
HMGN1-212ENST00000479586 PABPN1Q86U42 306 aaKnown RBP eCLIP37.99■■■■□ 3.67
HMGN1-212ENST00000479586 DCAF8L2P0C7V8 631 aa37.86■■■■□ 3.65
HMGN1-212ENST00000479586 UNC13AQ9UPW8 1703 aa37.78■■■■□ 3.64
HMGN1-212ENST00000479586 BICRAQ9NZM4 1560 aa37.55■■■■□ 3.6
HMGN1-212ENST00000479586 MYO15BQ96JP2 1530 aa37.41■■■■□ 3.58
HMGN1-212ENST00000479586 CC2D2AQ9P2K1 1620 aa36.92■■■■□ 3.5
HMGN1-212ENST00000479586 CECR2Q9BXF3 1484 aa36.91■■■■□ 3.5
HMGN1-212ENST00000479586 SHROOM4Q9ULL8 1493 aa36.9■■■■□ 3.5
HMGN1-212ENST00000479586 ZCCHC6Q5VYS8 1495 aaKnown RBP36.76■■■■□ 3.48
HMGN1-212ENST00000479586 DCAF1Q9Y4B6 1507 aa36.7■■■■□ 3.47
HMGN1-212ENST00000479586 EIF4G1Q04637 1599 aaKnown RBP36.67■■■■□ 3.46
HMGN1-212ENST00000479586 SCRIBQ14160 1630 aa36.67■■■■□ 3.46
HMGN1-212ENST00000479586 DNAJC5Q9H3Z4 198 aa36.22■■■■□ 3.39
HMGN1-212ENST00000479586 CUX2O14529 1486 aa35.49■■■■□ 3.27
HMGN1-212ENST00000479586 ERCC6Q03468 1493 aa35.35■■■■□ 3.25
HMGN1-212ENST00000479586 NCAPD3P42695 1498 aa35.26■■■■□ 3.23
HMGN1-212ENST00000479586 ATAD2BQ9ULI0 1458 aa35.08■■■■□ 3.21
HMGN1-212ENST00000479586 NESP48681 1621 aa34.98■■■■□ 3.19
HMGN1-212ENST00000479586 HMGXB3Q12766 1538 aa34.94■■■■□ 3.18
HMGN1-212ENST00000479586 SMARCA2P51531 1590 aa34.91■■■■□ 3.18
HMGN1-212ENST00000479586 SMARCA4P51532 1647 aa34.88■■■■□ 3.17
HMGN1-212ENST00000479586 THOC2Q8NI27 1593 aaKnown RBP34.74■■■■□ 3.15
HMGN1-212ENST00000479586 BAZ1BQ9UIG0 1483 aaKnown RBP34.7■■■■□ 3.15
HMGN1-212ENST00000479586 BAZ1AQ9NRL2 1556 aaPredicted RBP34.59■■■■□ 3.13
HMGN1-212ENST00000479586 LAMC3Q9Y6N6 1575 aa34.57■■■■□ 3.12
HMGN1-212ENST00000479586 PEG3Q9GZU2 1588 aa34.53■■■■□ 3.12
HMGN1-212ENST00000479586 KIF21AQ7Z4S6 1674 aa34.48■■■■□ 3.11
HMGN1-212ENST00000479586 TRIM41Q8WV44 630 aa34.39■■■■□ 3.1
HMGN1-212ENST00000479586 PDS5BQ9NTI5 1447 aa34.38■■■■□ 3.09
HMGN1-212ENST00000479586 MROH2BQ7Z745 1585 aa34.33■■■■□ 3.09
HMGN1-212ENST00000479586 CADPSQ9ULU8 1353 aa34.16■■■■□ 3.06
HMGN1-212ENST00000479586 MRC2Q9UBG0 1479 aa34.15■■■■□ 3.06
HMGN1-212ENST00000479586 WDR62O43379 1518 aa34.09■■■■□ 3.05
HMGN1-212ENST00000479586 WIZO95785 1651 aa33.89■■■■□ 3.02
HMGN1-212ENST00000479586 CEP164Q9UPV0 1460 aa33.88■■■■□ 3.01
HMGN1-212ENST00000479586 FANCD2Q9BXW9 1451 aa33.8■■■■□ 3
HMGN1-212ENST00000479586 OSCARQ8IYS5 282 aa33.74■■■□□ 2.99
HMGN1-212ENST00000479586 CFTRP13569 1480 aa33.63■■■□□ 2.97
HMGN1-212ENST00000479586 URB2Q14146 1524 aaKnown RBP33.58■■■□□ 2.97
HMGN1-212ENST00000479586 RIMBP3CA6NJZ7 1639 aa33.43■■■□□ 2.94
HMGN1-212ENST00000479586 RIMBP3BA6NNM3 1639 aa33.43■■■□□ 2.94
HMGN1-212ENST00000479586 RIMBP3Q9UFD9 1639 aa33.43■■■□□ 2.94
HMGN1-212ENST00000479586 TOP2AP11388 1531 aaKnown RBP33.38■■■□□ 2.93
HMGN1-212ENST00000479586 RSF1Q96T23 1441 aaPredicted RBP33.36■■■□□ 2.93
HMGN1-212ENST00000479586 ZNF608Q9ULD9 1512 aaPredicted RBP33.28■■■□□ 2.92
HMGN1-212ENST00000479586 ARHGEF11O15085 1522 aa33.26■■■□□ 2.91
HMGN1-212ENST00000479586 PRDM2Q13029 1718 aa33.24■■■□□ 2.91
HMGN1-212ENST00000479586 IFT140Q96RY7 1462 aa33.22■■■□□ 2.91
HMGN1-212ENST00000479586 TOPBP1Q92547 1522 aa33.09■■■□□ 2.89
HMGN1-212ENST00000479586 EIF4G3O43432 1585 aaKnown RBP33.05■■■□□ 2.88
HMGN1-212ENST00000479586 CYB5RLQ6IPT4 315 aa33.03■■■□□ 2.88
HMGN1-212ENST00000479586 CCDC88BA6NC98 1476 aa33.02■■■□□ 2.88
HMGN1-212ENST00000479586 CHD1O14646 1710 aa32.94■■■□□ 2.86
HMGN1-212ENST00000479586 ARAP1Q96P48 1450 aa32.9■■■□□ 2.86
HMGN1-212ENST00000479586 ABCC8Q09428 1581 aa32.9■■■□□ 2.86
HMGN1-212ENST00000479586 DNMBPQ6XZF7 1577 aa32.89■■■□□ 2.86
HMGN1-212ENST00000479586 AQRO60306 1485 aaKnown RBP eCLIP32.88■■■□□ 2.855e-16■■■■■ 28.5
HMGN1-212ENST00000479586 TRHP20396 242 aaPredicted RBP32.86■■■□□ 2.85
HMGN1-212ENST00000479586 TARBP1Q13395 1621 aaKnown RBP32.84■■■□□ 2.85
HMGN1-212ENST00000479586 FBLN2P98095 1184 aa32.78■■■□□ 2.84
HMGN1-212ENST00000479586 POLA1P09884 1462 aaPredicted RBP32.71■■■□□ 2.83
HMGN1-212ENST00000479586 RAD54L2Q9Y4B4 1467 aa32.62■■■□□ 2.81
HMGN1-212ENST00000479586 TDRD9Q8NDG6 1382 aaKnown RBP32.58■■■□□ 2.81
HMGN1-212ENST00000479586 CLASP1Q7Z460 1538 aa32.54■■■□□ 2.8
HMGN1-212ENST00000479586 SNAPC4Q5SXM2 1469 aa32.54■■■□□ 2.8
HMGN1-212ENST00000479586 SOGA1O94964 1423 aa32.52■■■□□ 2.8
HMGN1-212ENST00000479586 SYNJ1O43426 1573 aa32.42■■■□□ 2.78
HMGN1-212ENST00000479586 FGD5Q6ZNL6 1462 aa32.42■■■□□ 2.78
HMGN1-212ENST00000479586 WDR97A6NE52 1622 aa32.4■■■□□ 2.78
HMGN1-212ENST00000479586 CHMP7Q8WUX9 453 aaPredicted RBP32.4■■■□□ 2.78
HMGN1-212ENST00000479586 MAGI1Q96QZ7 1491 aaPredicted RBP32.38■■■□□ 2.77
HMGN1-212ENST00000479586 AEBP2Q6ZN18 517 aaPredicted RBP32.37■■■□□ 2.77
HMGN1-212ENST00000479586 GRIN2BQ13224 1484 aa32.31■■■□□ 2.76
HMGN1-212ENST00000479586 SYNJ2O15056 1496 aa32.29■■■□□ 2.76
HMGN1-212ENST00000479586 CUX1P39880 1505 aa32.29■■■□□ 2.76
HMGN1-212ENST00000479586 GAPVD1Q14C86 1478 aa32.22■■■□□ 2.75
HMGN1-212ENST00000479586 PBRM1Q86U86 1689 aa32.17■■■□□ 2.74
HMGN1-212ENST00000479586 ERCC6L2Q5T890 1561 aa32.02■■■□□ 2.72
HMGN1-212ENST00000479586 ABCA5Q8WWZ7 1642 aa32.02■■■□□ 2.72
HMGN1-212ENST00000479586 ABCA10Q8WWZ4 1543 aa31.99■■■□□ 2.71
HMGN1-212ENST00000479586 GRIN2AQ12879 1464 aa31.91■■■□□ 2.7
HMGN1-212ENST00000479586 CEP170Q5SW79 1584 aa31.88■■■□□ 2.69
HMGN1-212ENST00000479586 ADAMTS12P58397 1594 aa31.84■■■□□ 2.69
HMGN1-212ENST00000479586 NUP160Q12769 1436 aa31.83■■■□□ 2.69
HMGN1-212ENST00000479586 SHROOM2Q13796 1616 aa31.77■■■□□ 2.68
HMGN1-212ENST00000479586 KIF13AQ9H1H9 1805 aa31.72■■■□□ 2.67
HMGN1-212ENST00000479586 WRNQ14191 1432 aaPredicted RBP eCLIP31.72■■■□□ 2.67
HMGN1-212ENST00000479586 FHAD1B1AJZ9 1412 aa31.68■■■□□ 2.66
HMGN1-212ENST00000479586 PRG4Q92954 1404 aaPredicted RBP31.58■■■□□ 2.65
HMGN1-212ENST00000479586 BIVM-ERCC5R4GMW8 1640 aa31.57■■■□□ 2.64
HMGN1-212ENST00000479586 TOP2BQ02880 1626 aa31.57■■■□□ 2.64
HMGN1-212ENST00000479586 ERICH3Q5RHP9 1530 aa31.56■■■□□ 2.64
HMGN1-212ENST00000479586 JPH4Q96JJ6 628 aa31.48■■■□□ 2.63
HMGN1-212ENST00000479586 FAM69CQ0P6D2 419 aa31.46■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms