RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 NISCHQ9Y2I1 1504 aa41■■■■■ 4.15
TRIM28-215ENST00000601150 CCDC180Q9P1Z9 1646 aa36.54■■■■□ 3.44
TRIM28-215ENST00000601150 ABCC9O60706 1549 aa35.68■■■■□ 3.3
TRIM28-215ENST00000601150 RB1CC1Q8TDY2 1594 aa34.36■■■■□ 3.09
TRIM28-215ENST00000601150 NACADO15069 1562 aa34.31■■■■□ 3.08
TRIM28-215ENST00000601150 DCAF8L2P0C7V8 631 aa34.21■■■■□ 3.07
TRIM28-215ENST00000601150 ZCCHC6Q5VYS8 1495 aaKnown RBP34.15■■■■□ 3.06
TRIM28-215ENST00000601150 MYO15BQ96JP2 1530 aa34.09■■■■□ 3.05
TRIM28-215ENST00000601150 DCAF1Q9Y4B6 1507 aa33.94■■■■□ 3.02
TRIM28-215ENST00000601150 UNC13AQ9UPW8 1703 aa33.65■■■□□ 2.98
TRIM28-215ENST00000601150 BICRAQ9NZM4 1560 aa33.3■■■□□ 2.92
TRIM28-215ENST00000601150 PABPN1Q86U42 306 aaKnown RBP eCLIP33.3■■■□□ 2.922e-6■■□□□ 13.9
TRIM28-215ENST00000601150 SCRIBQ14160 1630 aa33.29■■■□□ 2.92
TRIM28-215ENST00000601150 SHROOM4Q9ULL8 1493 aa32.96■■■□□ 2.87
TRIM28-215ENST00000601150 DNAJC5BQ9UF47 199 aa32.71■■■□□ 2.83
TRIM28-215ENST00000601150 EIF4G1Q04637 1599 aaKnown RBP32.42■■■□□ 2.78
TRIM28-215ENST00000601150 CC2D2AQ9P2K1 1620 aa32.31■■■□□ 2.76
TRIM28-215ENST00000601150 CECR2Q9BXF3 1484 aa32.06■■■□□ 2.72
TRIM28-215ENST00000601150 SMARCA4P51532 1647 aa31.85■■■□□ 2.69
TRIM28-215ENST00000601150 BAZ1AQ9NRL2 1556 aaPredicted RBP31.8■■■□□ 2.68
TRIM28-215ENST00000601150 ATAD2BQ9ULI0 1458 aa31.64■■■□□ 2.66
TRIM28-215ENST00000601150 SMARCA2P51531 1590 aa31.64■■■□□ 2.65
TRIM28-215ENST00000601150 NCAPD3P42695 1498 aa31.62■■■□□ 2.65
TRIM28-215ENST00000601150 MROH2BQ7Z745 1585 aa31.6■■■□□ 2.65
TRIM28-215ENST00000601150 PEG3Q9GZU2 1588 aa31.53■■■□□ 2.64
TRIM28-215ENST00000601150 HMGXB3Q12766 1538 aa31.49■■■□□ 2.63
TRIM28-215ENST00000601150 BAZ1BQ9UIG0 1483 aaKnown RBP31.4■■■□□ 2.62
TRIM28-215ENST00000601150 WIZO95785 1651 aa31.29■■■□□ 2.6
TRIM28-215ENST00000601150 RSF1Q96T23 1441 aaPredicted RBP31.2■■■□□ 2.59
TRIM28-215ENST00000601150 TOP2AP11388 1531 aaKnown RBP30.94■■■□□ 2.54
TRIM28-215ENST00000601150 NESP48681 1621 aa30.87■■■□□ 2.53
TRIM28-215ENST00000601150 LAMC3Q9Y6N6 1575 aa30.83■■■□□ 2.53
TRIM28-215ENST00000601150 ERCC6Q03468 1493 aa30.76■■■□□ 2.52
TRIM28-215ENST00000601150 CADPSQ9ULU8 1353 aa30.68■■■□□ 2.5
TRIM28-215ENST00000601150 PDS5BQ9NTI5 1447 aa30.59■■■□□ 2.49
TRIM28-215ENST00000601150 KIF21AQ7Z4S6 1674 aa30.58■■■□□ 2.49
TRIM28-215ENST00000601150 CCDC88BA6NC98 1476 aa30.55■■■□□ 2.48
TRIM28-215ENST00000601150 CFTRP13569 1480 aa30.51■■■□□ 2.48
TRIM28-215ENST00000601150 CUX2O14529 1486 aa30.45■■■□□ 2.47
TRIM28-215ENST00000601150 THOC2Q8NI27 1593 aaKnown RBP30.45■■■□□ 2.46
TRIM28-215ENST00000601150 PRDM2Q13029 1718 aa30.42■■■□□ 2.46
TRIM28-215ENST00000601150 SUPT5HO00267 1087 aaKnown RBP30.38■■■□□ 2.45
TRIM28-215ENST00000601150 FANCD2Q9BXW9 1451 aa30.36■■■□□ 2.45
TRIM28-215ENST00000601150 CEP164Q9UPV0 1460 aa30.34■■■□□ 2.45
TRIM28-215ENST00000601150 MRC2Q9UBG0 1479 aa30.29■■■□□ 2.44
TRIM28-215ENST00000601150 WDR62O43379 1518 aa30.2■■■□□ 2.42
TRIM28-215ENST00000601150 URB2Q14146 1524 aaKnown RBP30.06■■■□□ 2.4
TRIM28-215ENST00000601150 ABCC8Q09428 1581 aa29.89■■■□□ 2.38
TRIM28-215ENST00000601150 TOPBP1Q92547 1522 aa29.87■■■□□ 2.37
TRIM28-215ENST00000601150 DNMBPQ6XZF7 1577 aa29.86■■■□□ 2.37
TRIM28-215ENST00000601150 IFT140Q96RY7 1462 aa29.69■■■□□ 2.34
TRIM28-215ENST00000601150 CUX1P39880 1505 aa29.65■■■□□ 2.34
TRIM28-215ENST00000601150 POLA1P09884 1462 aaPredicted RBP29.61■■■□□ 2.33
TRIM28-215ENST00000601150 TARBP1Q13395 1621 aaKnown RBP29.58■■■□□ 2.33
TRIM28-215ENST00000601150 FGD5Q6ZNL6 1462 aa29.55■■■□□ 2.32
TRIM28-215ENST00000601150 ZNF608Q9ULD9 1512 aaPredicted RBP29.54■■■□□ 2.32
TRIM28-215ENST00000601150 DNAJC5Q9H3Z4 198 aa29.5■■■□□ 2.31
TRIM28-215ENST00000601150 SOGA1O94964 1423 aa29.49■■■□□ 2.31
TRIM28-215ENST00000601150 EIF4G3O43432 1585 aaKnown RBP29.47■■■□□ 2.31
TRIM28-215ENST00000601150 RAD54L2Q9Y4B4 1467 aa29.47■■■□□ 2.31
TRIM28-215ENST00000601150 WRNQ14191 1432 aaPredicted RBP eCLIP29.44■■■□□ 2.3
TRIM28-215ENST00000601150 BIVM-ERCC5R4GMW8 1640 aa29.43■■■□□ 2.3
TRIM28-215ENST00000601150 TOP2BQ02880 1626 aa29.41■■■□□ 2.3
TRIM28-215ENST00000601150 SYNJ1O43426 1573 aa29.39■■■□□ 2.29
TRIM28-215ENST00000601150 WDR97A6NE52 1622 aa29.37■■■□□ 2.29
TRIM28-215ENST00000601150 AQRO60306 1485 aaKnown RBP eCLIP29.36■■■□□ 2.291e-11■■■■■ 33.6
TRIM28-215ENST00000601150 TDRD9Q8NDG6 1382 aaKnown RBP29.3■■■□□ 2.28
TRIM28-215ENST00000601150 ABCA10Q8WWZ4 1543 aa29.26■■■□□ 2.27
TRIM28-215ENST00000601150 ABCA5Q8WWZ7 1642 aa29.18■■■□□ 2.26
TRIM28-215ENST00000601150 PBRM1Q86U86 1689 aa29.18■■■□□ 2.26
TRIM28-215ENST00000601150 GRIN2BQ13224 1484 aa29.17■■■□□ 2.26
TRIM28-215ENST00000601150 OSCARQ8IYS5 282 aa29.16■■■□□ 2.26
TRIM28-215ENST00000601150 GAPVD1Q14C86 1478 aa29.16■■■□□ 2.26
TRIM28-215ENST00000601150 CHD1O14646 1710 aa29.14■■■□□ 2.26
TRIM28-215ENST00000601150 SNAPC4Q5SXM2 1469 aa29.11■■■□□ 2.25
TRIM28-215ENST00000601150 MAGI1Q96QZ7 1491 aaPredicted RBP29.1■■■□□ 2.25
TRIM28-215ENST00000601150 FBLN2P98095 1184 aa29.01■■■□□ 2.23
TRIM28-215ENST00000601150 SYNJ2O15056 1496 aa28.97■■■□□ 2.23
TRIM28-215ENST00000601150 CHMP7Q8WUX9 453 aaPredicted RBP28.94■■■□□ 2.22
TRIM28-215ENST00000601150 ERICH3Q5RHP9 1530 aa28.93■■■□□ 2.22
TRIM28-215ENST00000601150 ADAMTS12P58397 1594 aa28.89■■■□□ 2.22
TRIM28-215ENST00000601150 KIF27Q86VH2 1401 aa28.83■■■□□ 2.21
TRIM28-215ENST00000601150 FHAD1B1AJZ9 1412 aa28.82■■■□□ 2.2
TRIM28-215ENST00000601150 GRIN2AQ12879 1464 aa28.78■■■□□ 2.2
TRIM28-215ENST00000601150 CLASP1Q7Z460 1538 aa28.78■■■□□ 2.2
TRIM28-215ENST00000601150 RIMBP3CA6NJZ7 1639 aa28.75■■■□□ 2.19
TRIM28-215ENST00000601150 RIMBP3BA6NNM3 1639 aa28.75■■■□□ 2.19
TRIM28-215ENST00000601150 RIMBP3Q9UFD9 1639 aa28.75■■■□□ 2.19
TRIM28-215ENST00000601150 ARHGEF11O15085 1522 aa28.71■■■□□ 2.19
TRIM28-215ENST00000601150 TRIM41Q8WV44 630 aa28.71■■■□□ 2.19
TRIM28-215ENST00000601150 CUL7Q14999 1698 aa28.7■■■□□ 2.18
TRIM28-215ENST00000601150 IGF1RP08069 1367 aa28.68■■■□□ 2.18
TRIM28-215ENST00000601150 CEP170Q5SW79 1584 aa28.66■■■□□ 2.18
TRIM28-215ENST00000601150 NUP160Q12769 1436 aa28.64■■■□□ 2.18
TRIM28-215ENST00000601150 RUSC2Q8N2Y8 1516 aa28.54■■■□□ 2.16
TRIM28-215ENST00000601150 CARMIL1Q5VZK9 1371 aa28.52■■■□□ 2.16
TRIM28-215ENST00000601150 SHROOM2Q13796 1616 aa28.47■■■□□ 2.15
TRIM28-215ENST00000601150 ARAP1Q96P48 1450 aa28.47■■■□□ 2.15
TRIM28-215ENST00000601150 CYB5RLQ6IPT4 315 aa28.41■■■□□ 2.14
TRIM28-215ENST00000601150 KIAA0586Q9BVV6 1533 aa28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 6.2 ms