Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PTPN9P43378 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.82■■□□□ 1.88
PTPN9P43378 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PTPN9P43378 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
PTPN9P43378 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.82■■□□□ 1.88
PTPN9P43378 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.82■■□□□ 1.88
PTPN9P43378 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PTPN9P43378 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
PTPN9P43378 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.81■■□□□ 1.88
PTPN9P43378 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
PTPN9P43378 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC26.8■■□□□ 1.88
PTPN9P43378 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.8■■□□□ 1.88
PTPN9P43378 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.8■■□□□ 1.88
PTPN9P43378 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
PTPN9P43378 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.8■■□□□ 1.88
PTPN9P43378 DRD5P2-201ENST00000421395 2012 ntBASIC26.8■■□□□ 1.88
PTPN9P43378 MEST-211ENST00000437945 1455 ntTSL 5 BASIC26.8■■□□□ 1.88
PTPN9P43378 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
PTPN9P43378 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.79■■□□□ 1.88
PTPN9P43378 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
PTPN9P43378 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.79■■□□□ 1.88
PTPN9P43378 AC100797.4-201ENST00000631653 1827 ntBASIC26.79■■□□□ 1.88
PTPN9P43378 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
PTPN9P43378 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
PTPN9P43378 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
PTPN9P43378 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.78■■□□□ 1.88
PTPN9P43378 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.78■■□□□ 1.88
PTPN9P43378 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
PTPN9P43378 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
PTPN9P43378 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
PTPN9P43378 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PTPN9P43378 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.77■■□□□ 1.88
PTPN9P43378 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.77■■□□□ 1.88
PTPN9P43378 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.77■■□□□ 1.88
PTPN9P43378 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.77■■□□□ 1.88
PTPN9P43378 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
PTPN9P43378 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
PTPN9P43378 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PTPN9P43378 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
PTPN9P43378 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.75■■□□□ 1.87
PTPN9P43378 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
PTPN9P43378 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.75■■□□□ 1.87
PTPN9P43378 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
PTPN9P43378 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.74■■□□□ 1.87
PTPN9P43378 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.74■■□□□ 1.87
PTPN9P43378 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
PTPN9P43378 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTPN9P43378 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.73■■□□□ 1.87
PTPN9P43378 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC26.73■■□□□ 1.87
PTPN9P43378 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
PTPN9P43378 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.73■■□□□ 1.87
PTPN9P43378 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTPN9P43378 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.72■■□□□ 1.87
PTPN9P43378 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PTPN9P43378 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
PTPN9P43378 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PTPN9P43378 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
PTPN9P43378 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTPN9P43378 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.71■■□□□ 1.87
PTPN9P43378 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.7■■□□□ 1.86
PTPN9P43378 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.7■■□□□ 1.86
PTPN9P43378 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.7■■□□□ 1.86
PTPN9P43378 AC142086.6-201ENST00000621154 1765 ntBASIC26.7■■□□□ 1.86
PTPN9P43378 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
PTPN9P43378 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
PTPN9P43378 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
PTPN9P43378 PROC-203ENST00000409048 1586 ntTSL 5 BASIC26.69■■□□□ 1.86
PTPN9P43378 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
PTPN9P43378 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.68■■□□□ 1.86
PTPN9P43378 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
PTPN9P43378 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC26.68■■□□□ 1.86
PTPN9P43378 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
PTPN9P43378 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTPN9P43378 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.67■■□□□ 1.86
PTPN9P43378 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PTPN9P43378 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
PTPN9P43378 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC26.66■■□□□ 1.86
PTPN9P43378 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PTPN9P43378 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
PTPN9P43378 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.65■■□□□ 1.86
PTPN9P43378 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.86
PTPN9P43378 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
PTPN9P43378 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.64■■□□□ 1.85
PTPN9P43378 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.63■■□□□ 1.85
PTPN9P43378 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
PTPN9P43378 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
PTPN9P43378 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PTPN9P43378 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.63■■□□□ 1.85
PTPN9P43378 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC26.63■■□□□ 1.85
PTPN9P43378 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
PTPN9P43378 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.62■■□□□ 1.85
PTPN9P43378 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
PTPN9P43378 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
PTPN9P43378 AP002414.2-202ENST00000590929 1450 ntBASIC26.62■■□□□ 1.85
PTPN9P43378 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.61■■□□□ 1.85
PTPN9P43378 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
PTPN9P43378 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
PTPN9P43378 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.6■■□□□ 1.85
PTPN9P43378 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
PTPN9P43378 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC26.59■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms