Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TMEM56-RWDD3S4R434 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TMEM56-RWDD3S4R434 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC15.98■□□□□ 0.15
TMEM56-RWDD3S4R434 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TMEM56-RWDD3S4R434 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TMEM56-RWDD3S4R434 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TMEM56-RWDD3S4R434 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC15.98■□□□□ 0.15
TMEM56-RWDD3S4R434 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
TMEM56-RWDD3S4R434 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 AC009113.1-201ENST00000570267 2443 ntBASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 JTB-203ENST00000368589 1216 ntTSL 2 BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 UQCRFS1P1-201ENST00000435169 820 ntBASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 AC023632.3-201ENST00000521633 145 ntBASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TMEM56-RWDD3S4R434 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 AC007613.1-201ENST00000572811 2597 ntBASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 TEX21P-204ENST00000641479 1693 ntBASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 GALNS-213ENST00000569433 723 ntTSL 3 BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 RAB43-208ENST00000615093 783 ntTSL 5 BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 GCK-205ENST00000437084 1385 ntTSL 5 BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.96■□□□□ 0.15
TMEM56-RWDD3S4R434 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
TMEM56-RWDD3S4R434 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC15.96■□□□□ 0.14
TMEM56-RWDD3S4R434 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TMEM56-RWDD3S4R434 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC15.96■□□□□ 0.14
TMEM56-RWDD3S4R434 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TMEM56-RWDD3S4R434 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC15.96■□□□□ 0.14
TMEM56-RWDD3S4R434 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
TMEM56-RWDD3S4R434 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
TMEM56-RWDD3S4R434 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 AC135050.7-201ENST00000624508 2218 ntBASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 RALB-208ENST00000631312 311 ntTSL 5 BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TMEM56-RWDD3S4R434 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms