Protein–RNA interactions for Protein: A2RU48

SMCO3, Single-pass membrane and coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3A2RU48 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 AC091305.1-201ENST00000479476 895 ntBASIC15.92■□□□□ 0.14
SMCO3A2RU48 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 AC106739.1-201ENST00000617035 715 ntBASIC15.92■□□□□ 0.14
SMCO3A2RU48 MIR6084-201ENST00000622012 110 ntBASIC15.92■□□□□ 0.14
SMCO3A2RU48 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 POLI-202ENST00000406285 2030 ntTSL 2 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 BX119927.1-201ENST00000636596 1552 ntBASIC15.92■□□□□ 0.14
SMCO3A2RU48 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMCO3A2RU48 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
SMCO3A2RU48 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMCO3A2RU48 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SMCO3A2RU48 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMCO3A2RU48 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SMCO3A2RU48 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMCO3A2RU48 NME4-202ENST00000382940 766 ntTSL 3 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMCO3A2RU48 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SMCO3A2RU48 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 FAM21FP-204ENST00000608637 956 ntBASIC15.91■□□□□ 0.14
SMCO3A2RU48 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 NME4-211ENST00000620944 1193 ntTSL 2 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 KRT8P36-201ENST00000489121 1440 ntBASIC15.91■□□□□ 0.14
SMCO3A2RU48 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMCO3A2RU48 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMCO3A2RU48 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMCO3A2RU48 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.91■□□□□ 0.14
SMCO3A2RU48 AC093484.2-201ENST00000580996 2166 ntBASIC15.9■□□□□ 0.14
SMCO3A2RU48 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMCO3A2RU48 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMCO3A2RU48 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMCO3A2RU48 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMCO3A2RU48 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 MIR939-201ENST00000401314 82 ntBASIC15.9■□□□□ 0.14
SMCO3A2RU48 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SMCO3A2RU48 AC010141.2-201ENST00000452426 721 ntBASIC15.9■□□□□ 0.14
SMCO3A2RU48 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SMCO3A2RU48 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMCO3A2RU48 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMCO3A2RU48 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SMCO3A2RU48 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SMCO3A2RU48 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMCO3A2RU48 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
SMCO3A2RU48 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMCO3A2RU48 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMCO3A2RU48 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMCO3A2RU48 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
SMCO3A2RU48 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMCO3A2RU48 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC15.89■□□□□ 0.13
SMCO3A2RU48 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMCO3A2RU48 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMCO3A2RU48 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC15.89■□□□□ 0.13
SMCO3A2RU48 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
SMCO3A2RU48 AC007322.3-201ENST00000426526 701 ntBASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms