RNA–Protein interactions for RNA: ENST00000613455.4

CPNE9-205, Transcript of copine family member 9, humanhuman

TSL 5 BASIC

Gene CPNE9, Length 1,742 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE9-205ENST00000613455 NISCHQ9Y2I1 1504 aa47.07■■■■■ 5.13
CPNE9-205ENST00000613455 CCDC180Q9P1Z9 1646 aa41.3■■■■■ 4.2
CPNE9-205ENST00000613455 ZCCHC6Q5VYS8 1495 aaKnown RBP39.48■■■■□ 3.91
CPNE9-205ENST00000613455 ABCC9O60706 1549 aa39.33■■■■□ 3.89
CPNE9-205ENST00000613455 DCAF1Q9Y4B6 1507 aa38.96■■■■□ 3.83
CPNE9-205ENST00000613455 DCAF8L2P0C7V8 631 aa38.81■■■■□ 3.8
CPNE9-205ENST00000613455 MYO15BQ96JP2 1530 aa38.66■■■■□ 3.78
CPNE9-205ENST00000613455 NACADO15069 1562 aa38.53■■■■□ 3.76
CPNE9-205ENST00000613455 RB1CC1Q8TDY2 1594 aa38.28■■■■□ 3.72
CPNE9-205ENST00000613455 SHROOM4Q9ULL8 1493 aa37.98■■■■□ 3.67
CPNE9-205ENST00000613455 SCRIBQ14160 1630 aa37.86■■■■□ 3.65
CPNE9-205ENST00000613455 UNC13AQ9UPW8 1703 aa37.57■■■■□ 3.6
CPNE9-205ENST00000613455 BICRAQ9NZM4 1560 aa37.18■■■■□ 3.54
CPNE9-205ENST00000613455 PABPN1Q86U42 306 aaKnown RBP eCLIP36.96■■■■□ 3.51
CPNE9-205ENST00000613455 CECR2Q9BXF3 1484 aa36.59■■■■□ 3.45
CPNE9-205ENST00000613455 BAZ1AQ9NRL2 1556 aaPredicted RBP36.37■■■■□ 3.41
CPNE9-205ENST00000613455 MROH2BQ7Z745 1585 aa36.34■■■■□ 3.41
CPNE9-205ENST00000613455 RSF1Q96T23 1441 aaPredicted RBP36.32■■■■□ 3.4
CPNE9-205ENST00000613455 SMARCA4P51532 1647 aa36.3■■■■□ 3.4
CPNE9-205ENST00000613455 SUPT5HO00267 1087 aaKnown RBP36.28■■■■□ 3.4
CPNE9-205ENST00000613455 EIF4G1Q04637 1599 aaKnown RBP36.07■■■■□ 3.36
CPNE9-205ENST00000613455 WIZO95785 1651 aa36.03■■■■□ 3.36
CPNE9-205ENST00000613455 PEG3Q9GZU2 1588 aa35.9■■■■□ 3.34
CPNE9-205ENST00000613455 ATAD2BQ9ULI0 1458 aa35.77■■■■□ 3.32
CPNE9-205ENST00000613455 SMARCA2P51531 1590 aa35.75■■■■□ 3.31
CPNE9-205ENST00000613455 TOP2AP11388 1531 aaKnown RBP35.66■■■■□ 3.3
CPNE9-205ENST00000613455 CC2D2AQ9P2K1 1620 aa35.64■■■■□ 3.3
CPNE9-205ENST00000613455 NCAPD3P42695 1498 aa35.54■■■■□ 3.28
CPNE9-205ENST00000613455 BAZ1BQ9UIG0 1483 aaKnown RBP35.53■■■■□ 3.28
CPNE9-205ENST00000613455 HMGXB3Q12766 1538 aa35.5■■■■□ 3.27
CPNE9-205ENST00000613455 CCDC88BA6NC98 1476 aa35.25■■■■□ 3.23
CPNE9-205ENST00000613455 DNAJC5BQ9UF47 199 aa35.06■■■■□ 3.2
CPNE9-205ENST00000613455 CFTRP13569 1480 aa34.64■■■■□ 3.14
CPNE9-205ENST00000613455 CADPSQ9ULU8 1353 aa34.57■■■■□ 3.12
CPNE9-205ENST00000613455 CHIC1Q5VXU3 224 aa34.56■■■■□ 3.12
CPNE9-205ENST00000613455 PRDM2Q13029 1718 aa34.51■■■■□ 3.12
CPNE9-205ENST00000613455 NESP48681 1621 aa34.42■■■■□ 3.1
CPNE9-205ENST00000613455 LAMC3Q9Y6N6 1575 aa34.42■■■■□ 3.1
CPNE9-205ENST00000613455 ABCC8Q09428 1581 aa34.38■■■■□ 3.09
CPNE9-205ENST00000613455 FANCD2Q9BXW9 1451 aa34.2■■■■□ 3.07
CPNE9-205ENST00000613455 WRNQ14191 1432 aaPredicted RBP eCLIP34.19■■■■□ 3.06
CPNE9-205ENST00000613455 TRIM41Q8WV44 630 aa34.16■■■■□ 3.06
CPNE9-205ENST00000613455 SYNJ1O43426 1573 aa34.12■■■■□ 3.05
CPNE9-205ENST00000613455 PDS5BQ9NTI5 1447 aa34.11■■■■□ 3.05
CPNE9-205ENST00000613455 KIF21AQ7Z4S6 1674 aa34.06■■■■□ 3.04
CPNE9-205ENST00000613455 CEP164Q9UPV0 1460 aa34.03■■■■□ 3.04
CPNE9-205ENST00000613455 CUX1P39880 1505 aa34.02■■■■□ 3.04
CPNE9-205ENST00000613455 TOP2BQ02880 1626 aa34.01■■■■□ 3.04
CPNE9-205ENST00000613455 BIVM-ERCC5R4GMW8 1640 aa34.01■■■■□ 3.03
CPNE9-205ENST00000613455 DNMBPQ6XZF7 1577 aa33.85■■■■□ 3.01
CPNE9-205ENST00000613455 URB2Q14146 1524 aaKnown RBP33.83■■■■□ 3.01
CPNE9-205ENST00000613455 TOPBP1Q92547 1522 aa33.8■■■■□ 3
CPNE9-205ENST00000613455 ERCC6Q03468 1493 aa33.75■■■□□ 2.99
CPNE9-205ENST00000613455 MRC2Q9UBG0 1479 aa33.73■■■□□ 2.99
CPNE9-205ENST00000613455 FGD5Q6ZNL6 1462 aa33.7■■■□□ 2.98
CPNE9-205ENST00000613455 THOC2Q8NI27 1593 aaKnown RBP33.63■■■□□ 2.97
CPNE9-205ENST00000613455 SOGA1O94964 1423 aa33.62■■■□□ 2.97
CPNE9-205ENST00000613455 WDR62O43379 1518 aa33.61■■■□□ 2.97
CPNE9-205ENST00000613455 POLA1P09884 1462 aaPredicted RBP33.61■■■□□ 2.97
CPNE9-205ENST00000613455 RUSC2Q8N2Y8 1516 aa33.52■■■□□ 2.96
CPNE9-205ENST00000613455 FAM9AQ8IZU1 332 aaPredicted RBP33.5■■■□□ 2.95
CPNE9-205ENST00000613455 EEA1Q15075 1411 aa33.47■■■□□ 2.95
CPNE9-205ENST00000613455 RAD54L2Q9Y4B4 1467 aa33.47■■■□□ 2.95
CPNE9-205ENST00000613455 ABCA10Q8WWZ4 1543 aa33.41■■■□□ 2.94
CPNE9-205ENST00000613455 WDR97A6NE52 1622 aa33.4■■■□□ 2.94
CPNE9-205ENST00000613455 CUX2O14529 1486 aa33.38■■■□□ 2.93
CPNE9-205ENST00000613455 TARBP1Q13395 1621 aaKnown RBP33.36■■■□□ 2.93
CPNE9-205ENST00000613455 KIF27Q86VH2 1401 aa33.35■■■□□ 2.93
CPNE9-205ENST00000613455 CSRNP3Q8WYN3 585 aa33.27■■■□□ 2.92
CPNE9-205ENST00000613455 IFT140Q96RY7 1462 aa33.24■■■□□ 2.91
CPNE9-205ENST00000613455 ABCA5Q8WWZ7 1642 aa33.21■■■□□ 2.91
CPNE9-205ENST00000613455 LOC105371045A0A1W2PR82 267 aa33.19■■■□□ 2.9
CPNE9-205ENST00000613455 TDRD9Q8NDG6 1382 aaKnown RBP33.14■■■□□ 2.9
CPNE9-205ENST00000613455 KIF21BO75037 1637 aa33.11■■■□□ 2.89
CPNE9-205ENST00000613455 IGF1RP08069 1367 aa33.1■■■□□ 2.89
CPNE9-205ENST00000613455 GAPVD1Q14C86 1478 aa33.09■■■□□ 2.89
CPNE9-205ENST00000613455 ZNF608Q9ULD9 1512 aaPredicted RBP33.09■■■□□ 2.89
CPNE9-205ENST00000613455 PRXQ9BXM0 1461 aa33.06■■■□□ 2.88
CPNE9-205ENST00000613455 AQRO60306 1485 aaKnown RBP eCLIP33.03■■■□□ 2.88
CPNE9-205ENST00000613455 EHMT2Q96KQ7 1210 aa33.02■■■□□ 2.88
CPNE9-205ENST00000613455 ERICH3Q5RHP9 1530 aa33.01■■■□□ 2.88
CPNE9-205ENST00000613455 EIF4G3O43432 1585 aaKnown RBP33■■■□□ 2.87
CPNE9-205ENST00000613455 PBRM1Q86U86 1689 aa33■■■□□ 2.87
CPNE9-205ENST00000613455 GOLGA3Q08378 1498 aa32.99■■■□□ 2.87
CPNE9-205ENST00000613455 RAPGEF2Q9Y4G8 1499 aa32.97■■■□□ 2.87
CPNE9-205ENST00000613455 CUL7Q14999 1698 aa32.95■■■□□ 2.86
CPNE9-205ENST00000613455 CARMIL1Q5VZK9 1371 aa32.91■■■□□ 2.86
CPNE9-205ENST00000613455 GRIN2BQ13224 1484 aa32.9■■■□□ 2.86
CPNE9-205ENST00000613455 ADAMTS12P58397 1594 aa32.8■■■□□ 2.84
CPNE9-205ENST00000613455 TNIKQ9UKE5 1360 aa32.79■■■□□ 2.84
CPNE9-205ENST00000613455 UBTFP17480 764 aaKnown RBP32.76■■■□□ 2.83
CPNE9-205ENST00000613455 SNAPC4Q5SXM2 1469 aa32.75■■■□□ 2.83
CPNE9-205ENST00000613455 FHAD1B1AJZ9 1412 aa32.73■■■□□ 2.83
CPNE9-205ENST00000613455 MAGI1Q96QZ7 1491 aaPredicted RBP32.7■■■□□ 2.83
CPNE9-205ENST00000613455 CEP162Q5TB80 1403 aa32.59■■■□□ 2.81
CPNE9-205ENST00000613455 SYNJ2O15056 1496 aa32.56■■■□□ 2.8
CPNE9-205ENST00000613455 CTTNBP2Q8WZ74 1663 aa32.53■■■□□ 2.8
CPNE9-205ENST00000613455 GRIN2AQ12879 1464 aa32.52■■■□□ 2.8
CPNE9-205ENST00000613455 CLIP1P30622 1438 aa32.43■■■□□ 2.78
CPNE9-205ENST00000613455 CHMP7Q8WUX9 453 aaPredicted RBP32.41■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms