Protein–RNA interactions for Protein: P26045

PTPN3, Tyrosine-protein phosphatase non-receptor type 3, humanhuman

Predictions only

Length 913 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3P26045 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26.56■■□□□ 1.84
PTPN3P26045 AC127502.1-201ENST00000399971 1502 ntBASIC26.55■■□□□ 1.84
PTPN3P26045 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.55■■□□□ 1.84
PTPN3P26045 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
PTPN3P26045 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.55■■□□□ 1.84
PTPN3P26045 MIR3665-201ENST00000578708 105 ntBASIC26.55■■□□□ 1.84
PTPN3P26045 AP006261.1-201ENST00000584783 668 ntBASIC26.55■■□□□ 1.84
PTPN3P26045 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.54■■□□□ 1.84
PTPN3P26045 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.54■■□□□ 1.84
PTPN3P26045 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
PTPN3P26045 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PTPN3P26045 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.52■■□□□ 1.84
PTPN3P26045 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
PTPN3P26045 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PTPN3P26045 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
PTPN3P26045 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
PTPN3P26045 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
PTPN3P26045 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
PTPN3P26045 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PTPN3P26045 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
PTPN3P26045 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC26.49■■□□□ 1.83
PTPN3P26045 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PTPN3P26045 AL162393.1-201ENST00000437852 946 ntBASIC26.48■■□□□ 1.83
PTPN3P26045 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PTPN3P26045 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PTPN3P26045 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
PTPN3P26045 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
PTPN3P26045 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
PTPN3P26045 MIR6090-201ENST00000622481 60 ntBASIC26.46■■□□□ 1.83
PTPN3P26045 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PTPN3P26045 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
PTPN3P26045 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
PTPN3P26045 AC108673.1-201ENST00000510422 1159 ntBASIC26.45■■□□□ 1.82
PTPN3P26045 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
PTPN3P26045 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.82
PTPN3P26045 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
PTPN3P26045 AC087741.3-201ENST00000624270 1347 ntBASIC26.43■■□□□ 1.82
PTPN3P26045 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
PTPN3P26045 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PTPN3P26045 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC26.42■■□□□ 1.82
PTPN3P26045 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTPN3P26045 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.42■■□□□ 1.82
PTPN3P26045 AP004833.2-201ENST00000532228 1454 ntBASIC26.41■■□□□ 1.82
PTPN3P26045 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC26.41■■□□□ 1.82
PTPN3P26045 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC26.4■■□□□ 1.82
PTPN3P26045 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
PTPN3P26045 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC26.39■■□□□ 1.82
PTPN3P26045 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
PTPN3P26045 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
PTPN3P26045 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTPN3P26045 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
PTPN3P26045 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC26.35■■□□□ 1.81
PTPN3P26045 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
PTPN3P26045 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTPN3P26045 DRD5P2-201ENST00000421395 2012 ntBASIC26.34■■□□□ 1.81
PTPN3P26045 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC26.34■■□□□ 1.81
PTPN3P26045 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.34■■□□□ 1.81
PTPN3P26045 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
PTPN3P26045 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PTPN3P26045 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
PTPN3P26045 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PTPN3P26045 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
PTPN3P26045 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.32■■□□□ 1.8
PTPN3P26045 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PTPN3P26045 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PTPN3P26045 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PTPN3P26045 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
PTPN3P26045 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTPN3P26045 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.3■■□□□ 1.8
PTPN3P26045 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
PTPN3P26045 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.29■■□□□ 1.8
PTPN3P26045 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PTPN3P26045 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTPN3P26045 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PTPN3P26045 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.28■■□□□ 1.8
PTPN3P26045 AC044849.2-201ENST00000606596 710 ntBASIC26.28■■□□□ 1.8
PTPN3P26045 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTPN3P26045 AC142086.6-201ENST00000621154 1765 ntBASIC26.28■■□□□ 1.8
PTPN3P26045 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTPN3P26045 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PTPN3P26045 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PTPN3P26045 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.27■■□□□ 1.8
PTPN3P26045 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PTPN3P26045 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
PTPN3P26045 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PTPN3P26045 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.25■■□□□ 1.79
PTPN3P26045 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTPN3P26045 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.25■■□□□ 1.79
PTPN3P26045 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.25■■□□□ 1.79
PTPN3P26045 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
PTPN3P26045 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
PTPN3P26045 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.24■■□□□ 1.79
PTPN3P26045 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
PTPN3P26045 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.24■■□□□ 1.79
PTPN3P26045 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
PTPN3P26045 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
PTPN3P26045 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PTPN3P26045 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.23■■□□□ 1.79
PTPN3P26045 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.23■■□□□ 1.79
PTPN3P26045 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms