Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CXCL1P09341 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CXCL1P09341 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.14■□□□□ 0.81
CXCL1P09341 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CXCL1P09341 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CXCL1P09341 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
CXCL1P09341 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CXCL1P09341 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.12■□□□□ 0.81
CXCL1P09341 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC20.12■□□□□ 0.81
CXCL1P09341 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CXCL1P09341 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
CXCL1P09341 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.12■□□□□ 0.81
CXCL1P09341 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
CXCL1P09341 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CXCL1P09341 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.11■□□□□ 0.81
CXCL1P09341 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL1P09341 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.11■□□□□ 0.81
CXCL1P09341 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL1P09341 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CXCL1P09341 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.1■□□□□ 0.81
CXCL1P09341 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CXCL1P09341 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL1P09341 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL1P09341 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL1P09341 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL1P09341 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.07■□□□□ 0.8
CXCL1P09341 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL1P09341 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL1P09341 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
CXCL1P09341 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CXCL1P09341 AC093323.1-202ENST00000635031 2045 ntBASIC20.05■□□□□ 0.8
CXCL1P09341 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.05■□□□□ 0.8
CXCL1P09341 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC20.05■□□□□ 0.8
CXCL1P09341 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CXCL1P09341 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CXCL1P09341 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CXCL1P09341 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
CXCL1P09341 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL1P09341 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CXCL1P09341 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL1P09341 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL1P09341 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CXCL1P09341 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL1P09341 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CXCL1P09341 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CXCL1P09341 AL139393.2-201ENST00000608721 2025 ntBASIC20.03■□□□□ 0.8
CXCL1P09341 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CXCL1P09341 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.02■□□□□ 0.8
CXCL1P09341 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CXCL1P09341 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CXCL1P09341 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CXCL1P09341 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CXCL1P09341 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20■□□□□ 0.79
CXCL1P09341 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CXCL1P09341 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CXCL1P09341 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CXCL1P09341 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CXCL1P09341 AL135925.1-201ENST00000605920 1701 ntBASIC19.99■□□□□ 0.79
CXCL1P09341 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CXCL1P09341 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CXCL1P09341 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CXCL1P09341 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.97■□□□□ 0.79
CXCL1P09341 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.97■□□□□ 0.79
CXCL1P09341 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.97■□□□□ 0.79
CXCL1P09341 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CXCL1P09341 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.96■□□□□ 0.79
CXCL1P09341 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CXCL1P09341 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CXCL1P09341 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
CXCL1P09341 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CXCL1P09341 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CXCL1P09341 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CXCL1P09341 AC020928.2-201ENST00000588717 2197 ntBASIC19.95■□□□□ 0.78
CXCL1P09341 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC19.95■□□□□ 0.78
CXCL1P09341 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CXCL1P09341 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CXCL1P09341 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC19.94■□□□□ 0.78
CXCL1P09341 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
CXCL1P09341 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CXCL1P09341 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CXCL1P09341 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL1P09341 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL1P09341 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL1P09341 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC19.92■□□□□ 0.78
CXCL1P09341 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL1P09341 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL1P09341 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL1P09341 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CXCL1P09341 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CXCL1P09341 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CXCL1P09341 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CXCL1P09341 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CXCL1P09341 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL1P09341 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL1P09341 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL1P09341 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL1P09341 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC19.89■□□□□ 0.77
CXCL1P09341 BX255925.1-201ENST00000566954 1854 ntBASIC19.89■□□□□ 0.77
CXCL1P09341 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CXCL1P09341 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms