Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 YGL014C-AYGL014C-A 162 nt3.13□□□□□ -1.91
UBP3Q01477 YLR120W-AYLR120W-A 102 nt3.13□□□□□ -1.91
UBP3Q01477 NCL1YBL024W 2055 nt3.13□□□□□ -1.91
UBP3Q01477 PMR1YGL167C 2853 nt3.13□□□□□ -1.91
UBP3Q01477 SRB8YCR081W 4284 nt3.12□□□□□ -1.91
UBP3Q01477 YAL042C-AYAL042C-A 378 nt3.12□□□□□ -1.91
UBP3Q01477 MRPL33YMR286W 261 nt3.12□□□□□ -1.91
UBP3Q01477 YOR015WYOR015W 360 nt3.12□□□□□ -1.91
UBP3Q01477 UBP11YKR098C 2154 nt3.12□□□□□ -1.91 RIP-Chip
UBP3Q01477 YHL005CYHL005C 393 nt3.11□□□□□ -1.91
UBP3Q01477 YIL059CYIL059C 366 nt3.11□□□□□ -1.91
UBP3Q01477 YJL070CYJL070C 2667 nt3.11□□□□□ -1.91 RIP-Chip
UBP3Q01477 ILS1YBL076C 3219 nt3.11□□□□□ -1.91
UBP3Q01477 YBT1YLL048C 4986 nt3.1□□□□□ -1.91
UBP3Q01477 SNU114YKL173W 3027 nt3.1□□□□□ -1.91
UBP3Q01477 GIN4YDR507C 3429 nt3.1□□□□□ -1.91 RIP-Chip
UBP3Q01477 INP51YIL002C 2841 nt3.1□□□□□ -1.91
UBP3Q01477 YEL014CYEL014C 306 nt3.1□□□□□ -1.91
UBP3Q01477 RPL23BYER117W 414 nt3.1□□□□□ -1.91 RIP-Chip
UBP3Q01477 ACB1YGR037C 264 nt3.1□□□□□ -1.91
UBP3Q01477 YGR164WYGR164W 336 nt3.1□□□□□ -1.91
UBP3Q01477 YMR321CYMR321C 318 nt3.1□□□□□ -1.91
UBP3Q01477 YNL028WYNL028W 318 nt3.1□□□□□ -1.91
UBP3Q01477 YIL169CYIL169C 2988 nt3.1□□□□□ -1.91
UBP3Q01477 AI5_ALPHAQ0070 1893 nt3.09□□□□□ -1.91
UBP3Q01477 IPT1YDR072C 1584 nt3.09□□□□□ -1.91
UBP3Q01477 VPS16YPL045W 2397 nt3.09□□□□□ -1.91 RIP-Chip
UBP3Q01477 RBK1YCR036W 1002 nt3.09□□□□□ -1.91
UBP3Q01477 YDL025W-AYDL025W-A 105 nt3.09□□□□□ -1.91
UBP3Q01477 FMP16YDR070C 282 nt3.09□□□□□ -1.91
UBP3Q01477 OLI1Q0130 231 nt3.09□□□□□ -1.91
UBP3Q01477 LSO2YGR169C-A 279 nt3.09□□□□□ -1.91
UBP3Q01477 MPH1YIR002C 2982 nt3.09□□□□□ -1.91
UBP3Q01477 YLR154W-EYLR154W-E 204 nt3.09□□□□□ -1.91
UBP3Q01477 DYN1YKR054C 12279 nt3.09□□□□□ -1.91
UBP3Q01477 YGR250CYGR250C 2346 nt3.09□□□□□ -1.92
UBP3Q01477 AMS1YGL156W 3252 nt3.09□□□□□ -1.92
UBP3Q01477 CAF120YNL278W 3183 nt3.08□□□□□ -1.92
UBP3Q01477 INP52YNL106C 3552 nt3.08□□□□□ -1.92
UBP3Q01477 CDC20YGL116W 1833 nt3.08□□□□□ -1.92
UBP3Q01477 YGL024WYGL024W 336 nt3.08□□□□□ -1.92
UBP3Q01477 YGL069CYGL069C 465 nt3.08□□□□□ -1.92
UBP3Q01477 RPS27AYKL156W 249 nt3.08□□□□□ -1.92
UBP3Q01477 RPL6AYML073C 531 nt3.08□□□□□ -1.92 RIP-Chip
UBP3Q01477 LSM7YNL147W 348 nt3.08□□□□□ -1.92
UBP3Q01477 RLI1YDR091C 1827 nt3.07□□□□□ -1.92
UBP3Q01477 YLR278CYLR278C 4026 nt3.07□□□□□ -1.92
UBP3Q01477 SKP2YNL311C 2292 nt3.07□□□□□ -1.92 RIP-Chip
UBP3Q01477 YGR050CYGR050C 357 nt3.07□□□□□ -1.92
UBP3Q01477 PCC1YKR095W-A 267 nt3.07□□□□□ -1.92
UBP3Q01477 RRT15YLR162W-A 189 nt3.07□□□□□ -1.92
UBP3Q01477 UPS1YLR193C 528 nt3.07□□□□□ -1.92
UBP3Q01477 YLR255CYLR255C 354 nt3.07□□□□□ -1.92
UBP3Q01477 CSE2YNR010W 450 nt3.07□□□□□ -1.92
UBP3Q01477 YEL043WYEL043W 2871 nt3.07□□□□□ -1.92
UBP3Q01477 UBP14YBR058C 2346 nt3.07□□□□□ -1.92
UBP3Q01477 HOS4YIL112W 3252 nt3.06□□□□□ -1.92
UBP3Q01477 JSN1YJR091C 3276 nt3.06□□□□□ -1.92 RIP-Chip
UBP3Q01477 MRP10YDL045W-A 288 nt3.06□□□□□ -1.92
UBP3Q01477 YIL080WYIL080W 4722 nt3.06□□□□□ -1.92
UBP3Q01477 YBL083CYBL083C 426 nt3.06□□□□□ -1.92
UBP3Q01477 KAR3YPR141C 2190 nt3.06□□□□□ -1.92
UBP3Q01477 ATG13YPR185W 2217 nt3.06□□□□□ -1.92
UBP3Q01477 LCD1YDR499W 2244 nt3.05□□□□□ -1.92
UBP3Q01477 TUS1YLR425W 3924 nt3.05□□□□□ -1.92
UBP3Q01477 YHR086W-AYHR086W-A 162 nt3.05□□□□□ -1.92
UBP3Q01477 MBB1YJL199C 327 nt3.05□□□□□ -1.92
UBP3Q01477 GRX8YLR364W 330 nt3.05□□□□□ -1.92
UBP3Q01477 YNL097C-BYNL097C-B 123 nt3.05□□□□□ -1.92
UBP3Q01477 YPR203WYPR203W 309 nt3.05□□□□□ -1.92
UBP3Q01477 HSC82YMR186W 2118 nt3.05□□□□□ -1.92
UBP3Q01477 PHO2YDL106C 1680 nt3.04□□□□□ -1.92
UBP3Q01477 CBF2YGR140W 2871 nt3.04□□□□□ -1.92
UBP3Q01477 HDA3YPR179C 1968 nt3.04□□□□□ -1.92 RIP-Chip
UBP3Q01477 PRE4YFR050C 801 nt3.04□□□□□ -1.92 RIP-Chip
UBP3Q01477 PNC1YGL037C 651 nt3.04□□□□□ -1.92
UBP3Q01477 YML007C-AYML007C-A 111 nt3.04□□□□□ -1.92
UBP3Q01477 snR48snR48 113 nt3.04□□□□□ -1.92
UBP3Q01477 TFC4YGR047C 3078 nt3.04□□□□□ -1.92
UBP3Q01477 YDR186CYDR186C 2634 nt3.04□□□□□ -1.92
UBP3Q01477 MRD1YPR112C 2664 nt3.03□□□□□ -1.92
UBP3Q01477 RIF1YBR275C 5751 nt3.03□□□□□ -1.92 RIP-Chip
UBP3Q01477 COF1YLL050C 432 nt3.03□□□□□ -1.92
UBP3Q01477 NUT2YPR168W 474 nt3.03□□□□□ -1.92
UBP3Q01477 YBR178WYBR178W 375 nt3.03□□□□□ -1.92
UBP3Q01477 TRS130YMR218C 3309 nt3.03□□□□□ -1.93
UBP3Q01477 TRX1YLR043C 312 nt3.02□□□□□ -1.93
UBP3Q01477 YBR277CYBR277C 402 nt3.02□□□□□ -1.93
UBP3Q01477 SLH1YGR271W 5904 nt3.02□□□□□ -1.93
UBP3Q01477 YGR067CYGR067C 2415 nt3.02□□□□□ -1.93
UBP3Q01477 GIS1YDR096W 2685 nt3.02□□□□□ -1.93
UBP3Q01477 DFG16YOR030W 1860 nt3.01□□□□□ -1.93
UBP3Q01477 SMD1YGR074W 441 nt3.01□□□□□ -1.93
UBP3Q01477 RPS29AYLR388W 171 nt3.01□□□□□ -1.93
UBP3Q01477 RPS12YOR369C 432 nt3.01□□□□□ -1.93 RIP-Chip
UBP3Q01477 YNL018CYNL018C 1839 nt3□□□□□ -1.93
UBP3Q01477 TOP2YNL088W 4287 nt3□□□□□ -1.93
UBP3Q01477 MOT1YPL082C 5604 nt3□□□□□ -1.93
UBP3Q01477 YDR426CYDR426C 378 nt3□□□□□ -1.93
UBP3Q01477 RPL33AYPL143W 324 nt3□□□□□ -1.93 RIP-Chip
Retrieved 100 of 7,029 protein–RNA pairs in 35.9 ms