Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 NSR1YGR159C 1245 nt21.9■■□□□ 1.1 RIP-Chip
UBP3Q01477 CCC1YLR220W 969 nt16.77■□□□□ 0.28 RIP-Chip
UBP3Q01477 RPP1BYDL130W 321 nt16.74■□□□□ 0.27 RIP-Chip
UBP3Q01477 SCJ1YMR214W 1134 nt16.15■□□□□ 0.18 RIP-Chip
UBP3Q01477 YDJ1YNL064C 1230 nt15.44■□□□□ 0.06 RIP-Chip
UBP3Q01477 GAR1YHR089C 618 nt15.13■□□□□ 0.01 RIP-Chip
UBP3Q01477 YNL208WYNL208W 600 nt14.93□□□□□ -0.02 RIP-Chip
UBP3Q01477 POA1YBR022W 534 nt14.76□□□□□ -0.05 RIP-Chip
UBP3Q01477 PUN1YLR414C 792 nt14.54□□□□□ -0.08 RIP-Chip
UBP3Q01477 SSA1YAL005C 1929 nt14.51□□□□□ -0.09 RIP-Chip
UBP3Q01477 FUN26YAL022C 1554 nt13.71□□□□□ -0.21 RIP-Chip
UBP3Q01477 YPS1YLR120C 1710 nt13.67□□□□□ -0.22 RIP-Chip
UBP3Q01477 CCT6YDR188W 1641 nt13.52□□□□□ -0.25 RIP-Chip
UBP3Q01477 DCW1YKL046C 1350 nt13.4□□□□□ -0.26 RIP-Chip
UBP3Q01477 EMI2YDR516C 1503 nt13.18□□□□□ -0.3 RIP-Chip
UBP3Q01477 RTS2YOR077W 699 nt12.96□□□□□ -0.33 RIP-Chip
UBP3Q01477 SCC4YER147C 1875 nt12.85□□□□□ -0.35 RIP-Chip
UBP3Q01477 LPX1YOR084W 1164 nt12.65□□□□□ -0.38 RIP-Chip
UBP3Q01477 SPP1YPL138C 1062 nt12.45□□□□□ -0.42 RIP-Chip
UBP3Q01477 FRD1YEL047C 1413 nt12.38□□□□□ -0.43 RIP-Chip
UBP3Q01477 PIB2YGL023C 1908 nt12.24□□□□□ -0.45 RIP-Chip
UBP3Q01477 BOP3YNL042W 1191 nt12.09□□□□□ -0.47 RIP-Chip
UBP3Q01477 YLL053CYLL053C 459 nt12.02□□□□□ -0.49 RIP-Chip
UBP3Q01477 YEL076C-AYEL076C-A 651 nt11.97□□□□□ -0.49 RIP-Chip
UBP3Q01477 YLR464WYLR464W 651 nt11.97□□□□□ -0.49 RIP-Chip
UBP3Q01477 YLR179CYLR179C 606 nt11.87□□□□□ -0.51 RIP-Chip
UBP3Q01477 ADO1YJR105W 1023 nt11.84□□□□□ -0.51 RIP-Chip
UBP3Q01477 GPI16YHR188C 1833 nt11.61□□□□□ -0.55 RIP-Chip
UBP3Q01477 YIR016WYIR016W 798 nt11.55□□□□□ -0.56 RIP-Chip
UBP3Q01477 FRE6YLL051C 2139 nt11.53□□□□□ -0.56 RIP-Chip
UBP3Q01477 BOR1YNL275W 1731 nt11.29□□□□□ -0.6 RIP-Chip
UBP3Q01477 TIM17YJL143W 477 nt11.22□□□□□ -0.61 RIP-Chip
UBP3Q01477 AVT6YER119C 1347 nt11.18□□□□□ -0.62 RIP-Chip
UBP3Q01477 MCH5YOR306C 1566 nt11.17□□□□□ -0.62 RIP-Chip
UBP3Q01477 SGT2YOR007C 1041 nt11.14□□□□□ -0.63 RIP-Chip
UBP3Q01477 DUS1YML080W 1272 nt11.1□□□□□ -0.63 RIP-Chip
UBP3Q01477 MIR1YJR077C 936 nt11.09□□□□□ -0.63 RIP-Chip
UBP3Q01477 DAT1YML113W 747 nt11.04□□□□□ -0.64 RIP-Chip
UBP3Q01477 YCR102CYCR102C 1107 nt10.96□□□□□ -0.65 RIP-Chip
UBP3Q01477 UBA4YHR111W 1323 nt10.93□□□□□ -0.66 RIP-Chip
UBP3Q01477 YKR005CYKR005C 1578 nt10.89□□□□□ -0.67 RIP-Chip
UBP3Q01477 SFA1YDL168W 1161 nt10.86□□□□□ -0.67 RIP-Chip
UBP3Q01477 RET2YFR051C 1641 nt10.85□□□□□ -0.67 RIP-Chip
UBP3Q01477 COQ2YNR041C 1119 nt10.76□□□□□ -0.69 RIP-Chip
UBP3Q01477 RTN2YDL204W 1182 nt10.74□□□□□ -0.69 RIP-Chip
UBP3Q01477 TOM6YOR045W 186 nt10.72□□□□□ -0.69 RIP-Chip
UBP3Q01477 AAC1YMR056C 930 nt10.68□□□□□ -0.7 RIP-Chip
UBP3Q01477 RBG1YAL036C 1110 nt10.66□□□□□ -0.7 RIP-Chip
UBP3Q01477 PEX2YJL210W 816 nt10.63□□□□□ -0.71 RIP-Chip
UBP3Q01477 RPL4AYBR031W 1089 nt10.54□□□□□ -0.72 RIP-Chip
UBP3Q01477 SSN3YPL042C 1668 nt10.48□□□□□ -0.73 RIP-Chip
UBP3Q01477 MSB4YOL112W 1479 nt10.3□□□□□ -0.76 RIP-Chip
UBP3Q01477 ALP1YNL270C 1722 nt10.28□□□□□ -0.76 RIP-Chip
UBP3Q01477 RSC4YKR008W 1878 nt10.24□□□□□ -0.77 RIP-Chip
UBP3Q01477 YMR226CYMR226C 804 nt10.24□□□□□ -0.77 RIP-Chip
UBP3Q01477 URA6YKL024C 615 nt10.02□□□□□ -0.81 RIP-Chip
UBP3Q01477 PRY1YJL079C 900 nt9.99□□□□□ -0.81 RIP-Chip
UBP3Q01477 SFP1YLR403W 2052 nt9.98□□□□□ -0.81 RIP-Chip
UBP3Q01477 NPP1YCR026C 2229 nt9.91□□□□□ -0.82 RIP-Chip
UBP3Q01477 INA1YLR413W 2028 nt9.9□□□□□ -0.82 RIP-Chip
UBP3Q01477 FMS1YMR020W 1527 nt9.88□□□□□ -0.83 RIP-Chip
UBP3Q01477 SEC61YLR378C 1443 nt9.88□□□□□ -0.83 RIP-Chip
UBP3Q01477 VRG4YGL225W 1014 nt9.85□□□□□ -0.83 RIP-Chip
UBP3Q01477 RSC8YFR037C 1674 nt9.82□□□□□ -0.84 RIP-Chip
UBP3Q01477 SPT20YOL148C 1815 nt9.82□□□□□ -0.84 RIP-Chip
UBP3Q01477 ESBP6YNL125C 2022 nt9.76□□□□□ -0.85 RIP-Chip
UBP3Q01477 ILV3YJR016C 1758 nt9.7□□□□□ -0.86 RIP-Chip
UBP3Q01477 OYE2YHR179W 1203 nt9.68□□□□□ -0.86 RIP-Chip
UBP3Q01477 VPS62YGR141W 1404 nt9.66□□□□□ -0.86 RIP-Chip
UBP3Q01477 STE4YOR212W 1272 nt9.66□□□□□ -0.86 RIP-Chip
UBP3Q01477 SNZ1YMR096W 894 nt9.64□□□□□ -0.87 RIP-Chip
UBP3Q01477 HOL1YNR055C 1761 nt9.62□□□□□ -0.87 RIP-Chip
UBP3Q01477 GPN2YOR262W 1044 nt9.58□□□□□ -0.88 RIP-Chip
UBP3Q01477 GNP1YDR508C 1992 nt9.57□□□□□ -0.88 RIP-Chip
UBP3Q01477 COQ8YGL119W 1506 nt9.51□□□□□ -0.89 RIP-Chip
UBP3Q01477 DIG1YPL049C 1359 nt9.46□□□□□ -0.9 RIP-Chip
UBP3Q01477 ILV2YMR108W 2064 nt9.45□□□□□ -0.9 RIP-Chip
UBP3Q01477 ZAP1YJL056C 2643 nt9.43□□□□□ -0.9 RIP-Chip
UBP3Q01477 GID8YMR135C 1368 nt9.42□□□□□ -0.9 RIP-Chip
UBP3Q01477 AAC3YBR085W 924 nt9.3□□□□□ -0.92 RIP-Chip
UBP3Q01477 FAF1YIL019W 1041 nt9.29□□□□□ -0.92 RIP-Chip
UBP3Q01477 SUV3YPL029W 2214 nt9.23□□□□□ -0.93 RIP-Chip
UBP3Q01477 HXK1YFR053C 1458 nt9.21□□□□□ -0.93 RIP-Chip
UBP3Q01477 ODC1YPL134C 933 nt9.21□□□□□ -0.94 RIP-Chip
UBP3Q01477 TIP1YBR067C 633 nt9.2□□□□□ -0.94 RIP-Chip
UBP3Q01477 TPC1YGR096W 945 nt9.19□□□□□ -0.94 RIP-Chip
UBP3Q01477 MET1YKR069W 1782 nt9.17□□□□□ -0.94 RIP-Chip
UBP3Q01477 RIM2YBR192W 1134 nt9.11□□□□□ -0.95 RIP-Chip
UBP3Q01477 URH1YDR400W 1023 nt9.08□□□□□ -0.96 RIP-Chip
UBP3Q01477 SAN1YDR143C 1833 nt9.04□□□□□ -0.96 RIP-Chip
UBP3Q01477 KRR1YCL059C 951 nt9.01□□□□□ -0.97 RIP-Chip
UBP3Q01477 MTO1YGL236C 2010 nt8.99□□□□□ -0.97 RIP-Chip
UBP3Q01477 LEU4YNL104C 1860 nt8.98□□□□□ -0.97 RIP-Chip
UBP3Q01477 YHR218WYHR218W 1812 nt8.97□□□□□ -0.97 RIP-Chip
UBP3Q01477 SDS24YBR214W 1584 nt8.97□□□□□ -0.97 RIP-Chip
UBP3Q01477 SBP1YHL034C 885 nt8.91□□□□□ -0.98 RIP-Chip
UBP3Q01477 LYS20YDL182W 1287 nt8.84□□□□□ -0.99 RIP-Chip
UBP3Q01477 YPT11YNL304W 1254 nt8.84□□□□□ -0.99 RIP-Chip
UBP3Q01477 ATG17YLR423C 1254 nt8.83□□□□□ -1 RIP-Chip
UBP3Q01477 INH1YDL181W 258 nt8.81□□□□□ -1 RIP-Chip
Retrieved 100 of 1,100 protein–RNA pairs in 2325.9 ms