Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 YMR324CYMR324C 243 nt2.46□□□□□ -2.02
RPN11P43588 ERP4YOR016C 624 nt2.46□□□□□ -2.02
RPN11P43588 YOR333CYOR333C 417 nt2.46□□□□□ -2.02
RPN11P43588 YPR089WYPR089W 2667 nt2.46□□□□□ -2.02
RPN11P43588 ISW1YBR245C 3390 nt2.46□□□□□ -2.02
RPN11P43588 POM152YMR129W 4014 nt2.45□□□□□ -2.02
RPN11P43588 SPC72YAL047C 1869 nt2.45□□□□□ -2.02
RPN11P43588 YMR045CYMR045C 5268 nt2.45□□□□□ -2.02
RPN11P43588 MKT1YNL085W 2493 nt2.45□□□□□ -2.02
RPN11P43588 YER137W-AYER137W-A 306 nt2.45□□□□□ -2.02
RPN11P43588 LSO2YGR169C-A 279 nt2.45□□□□□ -2.02
RPN11P43588 YHR086W-AYHR086W-A 162 nt2.45□□□□□ -2.02
RPN11P43588 RPS24BYIL069C 408 nt2.45□□□□□ -2.02
RPN11P43588 SEC22YLR268W 645 nt2.45□□□□□ -2.02
RPN11P43588 BSC3YLR465C 309 nt2.45□□□□□ -2.02
RPN11P43588 GPX2YBR244W 489 nt2.45□□□□□ -2.02
RPN11P43588 MSS11YMR164C 2277 nt2.44□□□□□ -2.02
RPN11P43588 SFB2YNL049C 2631 nt2.44□□□□□ -2.02
RPN11P43588 YHR210CYHR210C 1026 nt2.44□□□□□ -2.02
RPN11P43588 URM1YIL008W 300 nt2.44□□□□□ -2.02
RPN11P43588 COQ10YOL008W 624 nt2.44□□□□□ -2.02
RPN11P43588 ATP3YBR039W 936 nt2.44□□□□□ -2.02
RPN11P43588 FLO11YIR019C 4104 nt2.44□□□□□ -2.02
RPN11P43588 YIL080WYIL080W 4722 nt2.43□□□□□ -2.02
RPN11P43588 YDL025W-AYDL025W-A 105 nt2.43□□□□□ -2.02
RPN11P43588 SRB8YCR081W 4284 nt2.42□□□□□ -2.02
RPN11P43588 CDC24YAL041W 2565 nt2.42□□□□□ -2.02
RPN11P43588 DIE2YGR227W 1578 nt2.42□□□□□ -2.02
RPN11P43588 MZM1YDR493W 372 nt2.42□□□□□ -2.02
RPN11P43588 TWF1YGR080W 999 nt2.42□□□□□ -2.02
RPN11P43588 YHR073W-AYHR073W-A 177 nt2.42□□□□□ -2.02
RPN11P43588 YAL059C-AYAL059C-A 423 nt2.42□□□□□ -2.02
RPN11P43588 MRPL33YMR286W 261 nt2.42□□□□□ -2.02
RPN11P43588 LSM7YNL147W 348 nt2.42□□□□□ -2.02
RPN11P43588 UBP11YKR098C 2154 nt2.42□□□□□ -2.02
RPN11P43588 BRE1YDL074C 2103 nt2.41□□□□□ -2.02
RPN11P43588 YAP6YDR259C 1152 nt2.41□□□□□ -2.02
RPN11P43588 YER076W-AYER076W-A 348 nt2.41□□□□□ -2.02
RPN11P43588 YGR050CYGR050C 357 nt2.41□□□□□ -2.02
RPN11P43588 YNL058CYNL058C 951 nt2.41□□□□□ -2.02
RPN11P43588 YPL185WYPL185W 396 nt2.41□□□□□ -2.02
RPN11P43588 YPR146CYPR146C 330 nt2.41□□□□□ -2.02
RPN11P43588 BNI1YNL271C 5862 nt2.41□□□□□ -2.02
RPN11P43588 REV1YOR346W 2958 nt2.4□□□□□ -2.02
RPN11P43588 VPS13YLL040C 9435 nt2.4□□□□□ -2.02
RPN11P43588 HOS4YIL112W 3252 nt2.4□□□□□ -2.02
RPN11P43588 YER023C-AYER023C-A 213 nt2.4□□□□□ -2.03
RPN11P43588 RTR1YER139C 681 nt2.4□□□□□ -2.03
RPN11P43588 RNP1YLL046C 750 nt2.4□□□□□ -2.03
RPN11P43588 MRPL50YNR022C 420 nt2.4□□□□□ -2.03
RPN11P43588 RTC6YPL183W-A 282 nt2.4□□□□□ -2.03
RPN11P43588 YBR277CYBR277C 402 nt2.4□□□□□ -2.03
RPN11P43588 BPH1YCR032W 6504 nt2.4□□□□□ -2.03
RPN11P43588 YJL070CYJL070C 2667 nt2.4□□□□□ -2.03
RPN11P43588 PRP6YBR055C 2700 nt2.4□□□□□ -2.03
RPN11P43588 AMS1YGL156W 3252 nt2.39□□□□□ -2.03
RPN11P43588 SSD1YDR293C 3753 nt2.39□□□□□ -2.03
RPN11P43588 ACB1YGR037C 264 nt2.39□□□□□ -2.03
RPN11P43588 YJL202CYJL202C 348 nt2.39□□□□□ -2.03
RPN11P43588 SHE2YKL130C 741 nt2.39□□□□□ -2.03
RPN11P43588 YMR272W-BYMR272W-B 108 nt2.39□□□□□ -2.03
RPN11P43588 YNL010WYNL010W 726 nt2.39□□□□□ -2.03
RPN11P43588 YBL071CYBL071C 309 nt2.39□□□□□ -2.03
RPN11P43588 TOP2YNL088W 4287 nt2.39□□□□□ -2.03
RPN11P43588 BFA1YJR053W 1725 nt2.39□□□□□ -2.03
RPN11P43588 PSD2YGR170W 3417 nt2.39□□□□□ -2.03
RPN11P43588 RLI1YDR091C 1827 nt2.38□□□□□ -2.03
RPN11P43588 UFD4YKL010C 4452 nt2.38□□□□□ -2.03
RPN11P43588 SNU114YKL173W 3027 nt2.38□□□□□ -2.03
RPN11P43588 IPT1YDR072C 1584 nt2.38□□□□□ -2.03
RPN11P43588 YPR197CYPR197C 564 nt2.38□□□□□ -2.03
RPN11P43588 YBR121C-AYBR121C-A 159 nt2.38□□□□□ -2.03
RPN11P43588 MPH1YIR002C 2982 nt2.38□□□□□ -2.03
RPN11P43588 NUP192YJL039C 5052 nt2.38□□□□□ -2.03
RPN11P43588 KAR3YPR141C 2190 nt2.37□□□□□ -2.03
RPN11P43588 PTC5YOR090C 1719 nt2.37□□□□□ -2.03
RPN11P43588 NCL1YBL024W 2055 nt2.37□□□□□ -2.03
RPN11P43588 TRM3YDL112W 4311 nt2.37□□□□□ -2.03
RPN11P43588 YMR320WYMR320W 306 nt2.37□□□□□ -2.03
RPN11P43588 VPS16YPL045W 2397 nt2.37□□□□□ -2.03
RPN11P43588 UBR1YGR184C 5853 nt2.36□□□□□ -2.03
RPN11P43588 SBE22YHR103W 2559 nt2.36□□□□□ -2.03
RPN11P43588 YDR209CYDR209C 414 nt2.36□□□□□ -2.03
RPN11P43588 RTT102YGR275W 474 nt2.36□□□□□ -2.03
RPN11P43588 ROX1YPR065W 1107 nt2.36□□□□□ -2.03
RPN11P43588 TAE2YPL009C 3117 nt2.36□□□□□ -2.03
RPN11P43588 SAP185YJL098W 3177 nt2.36□□□□□ -2.03
RPN11P43588 MSL5YLR116W 1431 nt2.35□□□□□ -2.03
RPN11P43588 YFR056CYFR056C 369 nt2.35□□□□□ -2.03
RPN11P43588 YML009C-AYML009C-A 327 nt2.35□□□□□ -2.03
RPN11P43588 VMR1YHL035C 4779 nt2.35□□□□□ -2.03
RPN11P43588 FAB1YFR019W 6837 nt2.35□□□□□ -2.03
RPN11P43588 YDR239CYDR239C 2364 nt2.35□□□□□ -2.03
RPN11P43588 CHC1YGL206C 4962 nt2.34□□□□□ -2.03
RPN11P43588 SEY1YOR165W 2331 nt2.34□□□□□ -2.03
RPN11P43588 RAV1YJR033C 4074 nt2.34□□□□□ -2.03
RPN11P43588 YOR121CYOR121C 306 nt2.34□□□□□ -2.03
RPN11P43588 YOR146WYOR146W 306 nt2.34□□□□□ -2.03
RPN11P43588 YOR343W-BYOR343W-B 5313 nt2.34□□□□□ -2.03
RPN11P43588 FAR11YNL127W 2862 nt2.33□□□□□ -2.04
Retrieved 100 of 7,029 protein–RNA pairs in 41.5 ms