Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA4P78363 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.57■□□□□ 0.4
ABCA4P78363 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.57■□□□□ 0.4
ABCA4P78363 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA4P78363 AP001412.1-201ENST00000608405 714 ntBASIC17.57■□□□□ 0.4
ABCA4P78363 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA4P78363 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC17.57■□□□□ 0.4
ABCA4P78363 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA4P78363 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
ABCA4P78363 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA4P78363 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.57■□□□□ 0.4
ABCA4P78363 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.57■□□□□ 0.4
ABCA4P78363 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA4P78363 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.56■□□□□ 0.4
ABCA4P78363 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.56■□□□□ 0.4
ABCA4P78363 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.56■□□□□ 0.4
ABCA4P78363 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.56■□□□□ 0.4
ABCA4P78363 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
ABCA4P78363 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
ABCA4P78363 AC012306.2-201ENST00000609350 630 ntBASIC17.56■□□□□ 0.4
ABCA4P78363 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA4P78363 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.56■□□□□ 0.4
ABCA4P78363 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA4P78363 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA4P78363 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.56■□□□□ 0.4
ABCA4P78363 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
ABCA4P78363 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
ABCA4P78363 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.56■□□□□ 0.4
ABCA4P78363 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA4P78363 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
ABCA4P78363 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.56■□□□□ 0.4
ABCA4P78363 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.56■□□□□ 0.4
ABCA4P78363 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
ABCA4P78363 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA4P78363 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.56■□□□□ 0.4
ABCA4P78363 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA4P78363 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
ABCA4P78363 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA4P78363 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.55■□□□□ 0.4
ABCA4P78363 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
ABCA4P78363 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA4P78363 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.55■□□□□ 0.4
ABCA4P78363 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA4P78363 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
ABCA4P78363 AC233723.2-201ENST00000623798 2106 ntBASIC17.55■□□□□ 0.4
ABCA4P78363 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA4P78363 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA4P78363 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA4P78363 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.55■□□□□ 0.4
ABCA4P78363 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA4P78363 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA4P78363 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
ABCA4P78363 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.55■□□□□ 0.4
ABCA4P78363 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA4P78363 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.55■□□□□ 0.4
ABCA4P78363 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.55■□□□□ 0.4
ABCA4P78363 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.55■□□□□ 0.4
ABCA4P78363 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.55■□□□□ 0.4
ABCA4P78363 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA4P78363 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA4P78363 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA4P78363 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC17.55■□□□□ 0.4
ABCA4P78363 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA4P78363 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA4P78363 CYP21A1P-202ENST00000354927 1481 ntBASIC17.54■□□□□ 0.4
ABCA4P78363 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA4P78363 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.54■□□□□ 0.4
ABCA4P78363 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
ABCA4P78363 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
ABCA4P78363 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.54■□□□□ 0.4
ABCA4P78363 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA4P78363 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.54■□□□□ 0.4
ABCA4P78363 AC005829.2-201ENST00000571422 1056 ntBASIC17.54■□□□□ 0.4
ABCA4P78363 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA4P78363 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA4P78363 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA4P78363 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.54■□□□□ 0.4
ABCA4P78363 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA4P78363 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.54■□□□□ 0.4
ABCA4P78363 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.54■□□□□ 0.4
ABCA4P78363 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA4P78363 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA4P78363 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA4P78363 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC17.54■□□□□ 0.4
ABCA4P78363 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA4P78363 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA4P78363 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA4P78363 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA4P78363 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA4P78363 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA4P78363 TMPOP1-202ENST00000424642 1267 ntBASIC17.53■□□□□ 0.4
ABCA4P78363 TSPY7P-201ENST00000431358 1114 ntBASIC17.53■□□□□ 0.4
ABCA4P78363 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA4P78363 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
ABCA4P78363 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.53■□□□□ 0.4
ABCA4P78363 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA4P78363 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
ABCA4P78363 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA4P78363 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA4P78363 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms