RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 NISCHQ9Y2I1 1504 aa47.92■■■■■ 5.26
PDLIM2-207ENST00000409417 CCDC180Q9P1Z9 1646 aa42.47■■■■■ 4.39
PDLIM2-207ENST00000409417 ABCC9O60706 1549 aa41.48■■■■■ 4.23
PDLIM2-207ENST00000409417 DCAF8L2P0C7V8 631 aa40.01■■■■■ 4
PDLIM2-207ENST00000409417 NACADO15069 1562 aa39.96■■■■□ 3.99
PDLIM2-207ENST00000409417 RB1CC1Q8TDY2 1594 aa39.94■■■■□ 3.98
PDLIM2-207ENST00000409417 ZCCHC6Q5VYS8 1495 aaKnown RBP39.93■■■■□ 3.98
PDLIM2-207ENST00000409417 MYO15BQ96JP2 1530 aa39.79■■■■□ 3.96
PDLIM2-207ENST00000409417 DCAF1Q9Y4B6 1507 aa39.66■■■■□ 3.94
PDLIM2-207ENST00000409417 UNC13AQ9UPW8 1703 aa38.95■■■■□ 3.83
PDLIM2-207ENST00000409417 PABPN1Q86U42 306 aaKnown RBP eCLIP38.82■■■■□ 3.81
PDLIM2-207ENST00000409417 SCRIBQ14160 1630 aa38.77■■■■□ 3.8
PDLIM2-207ENST00000409417 BICRAQ9NZM4 1560 aa38.72■■■■□ 3.79
PDLIM2-207ENST00000409417 SHROOM4Q9ULL8 1493 aa38.38■■■■□ 3.73
PDLIM2-207ENST00000409417 DNAJC5BQ9UF47 199 aa37.99■■■■□ 3.67
PDLIM2-207ENST00000409417 EIF4G1Q04637 1599 aaKnown RBP37.7■■■■□ 3.63
PDLIM2-207ENST00000409417 CC2D2AQ9P2K1 1620 aa37.5■■■■□ 3.59
PDLIM2-207ENST00000409417 CECR2Q9BXF3 1484 aa37.32■■■■□ 3.56
PDLIM2-207ENST00000409417 BAZ1AQ9NRL2 1556 aaPredicted RBP37.12■■■■□ 3.53
PDLIM2-207ENST00000409417 SMARCA4P51532 1647 aa37.11■■■■□ 3.53
PDLIM2-207ENST00000409417 ATAD2BQ9ULI0 1458 aa36.93■■■■□ 3.5
PDLIM2-207ENST00000409417 MROH2BQ7Z745 1585 aa36.91■■■■□ 3.5
PDLIM2-207ENST00000409417 NCAPD3P42695 1498 aa36.9■■■■□ 3.5
PDLIM2-207ENST00000409417 SMARCA2P51531 1590 aa36.88■■■■□ 3.49
PDLIM2-207ENST00000409417 PEG3Q9GZU2 1588 aa36.77■■■■□ 3.48
PDLIM2-207ENST00000409417 HMGXB3Q12766 1538 aa36.69■■■■□ 3.46
PDLIM2-207ENST00000409417 BAZ1BQ9UIG0 1483 aaKnown RBP36.62■■■■□ 3.45
PDLIM2-207ENST00000409417 RSF1Q96T23 1441 aaPredicted RBP36.58■■■■□ 3.45
PDLIM2-207ENST00000409417 WIZO95785 1651 aa36.48■■■■□ 3.43
PDLIM2-207ENST00000409417 TOP2AP11388 1531 aaKnown RBP36.14■■■■□ 3.38
PDLIM2-207ENST00000409417 NESP48681 1621 aa35.93■■■■□ 3.34
PDLIM2-207ENST00000409417 LAMC3Q9Y6N6 1575 aa35.85■■■■□ 3.33
PDLIM2-207ENST00000409417 CADPSQ9ULU8 1353 aa35.84■■■■□ 3.33
PDLIM2-207ENST00000409417 SUPT5HO00267 1087 aaKnown RBP35.77■■■■□ 3.32
PDLIM2-207ENST00000409417 ERCC6Q03468 1493 aa35.75■■■■□ 3.31
PDLIM2-207ENST00000409417 CCDC88BA6NC98 1476 aa35.74■■■■□ 3.31
PDLIM2-207ENST00000409417 PDS5BQ9NTI5 1447 aa35.66■■■■□ 3.3
PDLIM2-207ENST00000409417 CFTRP13569 1480 aa35.65■■■■□ 3.3
PDLIM2-207ENST00000409417 KIF21AQ7Z4S6 1674 aa35.44■■■■□ 3.26
PDLIM2-207ENST00000409417 FANCD2Q9BXW9 1451 aa35.4■■■■□ 3.26
PDLIM2-207ENST00000409417 CUX2O14529 1486 aa35.33■■■■□ 3.25
PDLIM2-207ENST00000409417 CEP164Q9UPV0 1460 aa35.33■■■■□ 3.25
PDLIM2-207ENST00000409417 THOC2Q8NI27 1593 aaKnown RBP35.31■■■■□ 3.24
PDLIM2-207ENST00000409417 MRC2Q9UBG0 1479 aa35.25■■■■□ 3.23
PDLIM2-207ENST00000409417 PRDM2Q13029 1718 aa35.24■■■■□ 3.23
PDLIM2-207ENST00000409417 WDR62O43379 1518 aa35.12■■■■□ 3.21
PDLIM2-207ENST00000409417 URB2Q14146 1524 aaKnown RBP35.03■■■■□ 3.2
PDLIM2-207ENST00000409417 ABCC8Q09428 1581 aa34.87■■■■□ 3.17
PDLIM2-207ENST00000409417 TOPBP1Q92547 1522 aa34.84■■■■□ 3.17
PDLIM2-207ENST00000409417 DNMBPQ6XZF7 1577 aa34.79■■■■□ 3.16
PDLIM2-207ENST00000409417 CUX1P39880 1505 aa34.62■■■■□ 3.13
PDLIM2-207ENST00000409417 IFT140Q96RY7 1462 aa34.6■■■■□ 3.13
PDLIM2-207ENST00000409417 POLA1P09884 1462 aaPredicted RBP34.56■■■■□ 3.12
PDLIM2-207ENST00000409417 FGD5Q6ZNL6 1462 aa34.48■■■■□ 3.11
PDLIM2-207ENST00000409417 WRNQ14191 1432 aaPredicted RBP eCLIP34.48■■■■□ 3.11
PDLIM2-207ENST00000409417 SOGA1O94964 1423 aa34.44■■■■□ 3.1
PDLIM2-207ENST00000409417 TARBP1Q13395 1621 aaKnown RBP34.43■■■■□ 3.1
PDLIM2-207ENST00000409417 ZNF608Q9ULD9 1512 aaPredicted RBP34.42■■■■□ 3.1
PDLIM2-207ENST00000409417 RAD54L2Q9Y4B4 1467 aa34.41■■■■□ 3.1
PDLIM2-207ENST00000409417 TOP2BQ02880 1626 aa34.35■■■■□ 3.09
PDLIM2-207ENST00000409417 SYNJ1O43426 1573 aa34.34■■■■□ 3.09
PDLIM2-207ENST00000409417 BIVM-ERCC5R4GMW8 1640 aa34.31■■■■□ 3.08
PDLIM2-207ENST00000409417 AQRO60306 1485 aaKnown RBP eCLIP34.27■■■■□ 3.08
PDLIM2-207ENST00000409417 EIF4G3O43432 1585 aaKnown RBP34.24■■■■□ 3.07
PDLIM2-207ENST00000409417 TDRD9Q8NDG6 1382 aaKnown RBP34.23■■■■□ 3.07
PDLIM2-207ENST00000409417 ABCA10Q8WWZ4 1543 aa34.18■■■■□ 3.06
PDLIM2-207ENST00000409417 WDR97A6NE52 1622 aa34.16■■■■□ 3.06
PDLIM2-207ENST00000409417 DNAJC5Q9H3Z4 198 aa34.14■■■■□ 3.06
PDLIM2-207ENST00000409417 GAPVD1Q14C86 1478 aa34.03■■■■□ 3.04
PDLIM2-207ENST00000409417 GRIN2BQ13224 1484 aa34.01■■■■□ 3.04
PDLIM2-207ENST00000409417 ABCA5Q8WWZ7 1642 aa33.98■■■■□ 3.03
PDLIM2-207ENST00000409417 OSCARQ8IYS5 282 aa33.95■■■■□ 3.02
PDLIM2-207ENST00000409417 SNAPC4Q5SXM2 1469 aa33.92■■■■□ 3.02
PDLIM2-207ENST00000409417 MAGI1Q96QZ7 1491 aaPredicted RBP33.91■■■■□ 3.02
PDLIM2-207ENST00000409417 PBRM1Q86U86 1689 aa33.85■■■■□ 3.01
PDLIM2-207ENST00000409417 FBLN2P98095 1184 aa33.84■■■■□ 3.01
PDLIM2-207ENST00000409417 CHMP7Q8WUX9 453 aaPredicted RBP33.79■■■■□ 3
PDLIM2-207ENST00000409417 TRIM41Q8WV44 630 aa33.79■■■■□ 3
PDLIM2-207ENST00000409417 SYNJ2O15056 1496 aa33.77■■■■□ 3
PDLIM2-207ENST00000409417 KIF27Q86VH2 1401 aa33.77■■■■□ 3
PDLIM2-207ENST00000409417 ERICH3Q5RHP9 1530 aa33.76■■■■□ 3
PDLIM2-207ENST00000409417 CHD1O14646 1710 aa33.75■■■□□ 2.99
PDLIM2-207ENST00000409417 FHAD1B1AJZ9 1412 aa33.66■■■□□ 2.98
PDLIM2-207ENST00000409417 ADAMTS12P58397 1594 aa33.64■■■□□ 2.98
PDLIM2-207ENST00000409417 IGF1RP08069 1367 aa33.63■■■□□ 2.97
PDLIM2-207ENST00000409417 GRIN2AQ12879 1464 aa33.56■■■□□ 2.96
PDLIM2-207ENST00000409417 CHIC1Q5VXU3 224 aa33.48■■■□□ 2.95
PDLIM2-207ENST00000409417 RUSC2Q8N2Y8 1516 aa33.45■■■□□ 2.95
PDLIM2-207ENST00000409417 CLASP1Q7Z460 1538 aa33.45■■■□□ 2.94
PDLIM2-207ENST00000409417 CUL7Q14999 1698 aa33.44■■■□□ 2.94
PDLIM2-207ENST00000409417 NUP160Q12769 1436 aa33.43■■■□□ 2.94
PDLIM2-207ENST00000409417 CARMIL1Q5VZK9 1371 aa33.42■■■□□ 2.94
PDLIM2-207ENST00000409417 CEP170Q5SW79 1584 aa33.36■■■□□ 2.93
PDLIM2-207ENST00000409417 ARHGEF11O15085 1522 aa33.32■■■□□ 2.93
PDLIM2-207ENST00000409417 RIMBP3CA6NJZ7 1639 aa33.27■■■□□ 2.92
PDLIM2-207ENST00000409417 RIMBP3BA6NNM3 1639 aa33.27■■■□□ 2.92
PDLIM2-207ENST00000409417 RIMBP3Q9UFD9 1639 aa33.27■■■□□ 2.92
PDLIM2-207ENST00000409417 RAPGEF2Q9Y4G8 1499 aa33.21■■■□□ 2.91
PDLIM2-207ENST00000409417 EEA1Q15075 1411 aa33.2■■■□□ 2.91
PDLIM2-207ENST00000409417 CSRNP3Q8WYN3 585 aa33.18■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms