Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC31.24■■■□□ 2.59
COL17A1Q9UMD9 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC31.24■■■□□ 2.59
COL17A1Q9UMD9 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC31.24■■■□□ 2.59
COL17A1Q9UMD9 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
COL17A1Q9UMD9 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
COL17A1Q9UMD9 NFE2L3P1-201ENST00000588207 1959 ntBASIC31.23■■■□□ 2.59
COL17A1Q9UMD9 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
COL17A1Q9UMD9 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC31.23■■■□□ 2.59
COL17A1Q9UMD9 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC31.23■■■□□ 2.59
COL17A1Q9UMD9 VPS72-207ENST00000640458 689 ntTSL 5 BASIC31.23■■■□□ 2.59
COL17A1Q9UMD9 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
COL17A1Q9UMD9 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
COL17A1Q9UMD9 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
COL17A1Q9UMD9 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
COL17A1Q9UMD9 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
COL17A1Q9UMD9 AL031133.1-201ENST00000406807 723 ntBASIC31.22■■■□□ 2.59
COL17A1Q9UMD9 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC31.22■■■□□ 2.59
COL17A1Q9UMD9 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
COL17A1Q9UMD9 F2R-202ENST00000505600 442 ntTSL 2 BASIC31.22■■■□□ 2.59
COL17A1Q9UMD9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
COL17A1Q9UMD9 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC31.22■■■□□ 2.59
COL17A1Q9UMD9 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
COL17A1Q9UMD9 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
COL17A1Q9UMD9 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
COL17A1Q9UMD9 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 AC027702.1-201ENST00000563810 1770 ntBASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 AL121829.2-201ENST00000620908 328 ntBASIC31.21■■■□□ 2.59
COL17A1Q9UMD9 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC31.2■■■□□ 2.59
COL17A1Q9UMD9 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
COL17A1Q9UMD9 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
COL17A1Q9UMD9 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
COL17A1Q9UMD9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
COL17A1Q9UMD9 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
COL17A1Q9UMD9 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.58
COL17A1Q9UMD9 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC31.2■■■□□ 2.58
COL17A1Q9UMD9 AL450487.1-201ENST00000426799 995 ntBASIC31.2■■■□□ 2.58
COL17A1Q9UMD9 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC31.2■■■□□ 2.58
COL17A1Q9UMD9 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC31.2■■■□□ 2.58
COL17A1Q9UMD9 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC31.19■■■□□ 2.58
COL17A1Q9UMD9 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL17A1Q9UMD9 AC087742.1-201ENST00000575880 1738 ntBASIC31.19■■■□□ 2.58
COL17A1Q9UMD9 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL17A1Q9UMD9 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL17A1Q9UMD9 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC31.19■■■□□ 2.58
COL17A1Q9UMD9 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL17A1Q9UMD9 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL17A1Q9UMD9 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
COL17A1Q9UMD9 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC31.19■■■□□ 2.58
COL17A1Q9UMD9 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL17A1Q9UMD9 NBPF21P-201ENST00000425093 1451 ntBASIC31.18■■■□□ 2.58
COL17A1Q9UMD9 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
COL17A1Q9UMD9 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC31.18■■■□□ 2.58
COL17A1Q9UMD9 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC31.18■■■□□ 2.58
COL17A1Q9UMD9 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL17A1Q9UMD9 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC31.18■■■□□ 2.58
COL17A1Q9UMD9 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC31.18■■■□□ 2.58
COL17A1Q9UMD9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL17A1Q9UMD9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL17A1Q9UMD9 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL17A1Q9UMD9 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL17A1Q9UMD9 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
COL17A1Q9UMD9 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC31.17■■■□□ 2.58
COL17A1Q9UMD9 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC31.17■■■□□ 2.58
COL17A1Q9UMD9 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC31.17■■■□□ 2.58
COL17A1Q9UMD9 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL17A1Q9UMD9 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL17A1Q9UMD9 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
COL17A1Q9UMD9 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC31.16■■■□□ 2.58
COL17A1Q9UMD9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL17A1Q9UMD9 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL17A1Q9UMD9 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC31.16■■■□□ 2.58
COL17A1Q9UMD9 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC31.16■■■□□ 2.58
COL17A1Q9UMD9 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC31.15■■■□□ 2.58
COL17A1Q9UMD9 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL17A1Q9UMD9 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL17A1Q9UMD9 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL17A1Q9UMD9 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC31.15■■■□□ 2.58
COL17A1Q9UMD9 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC31.15■■■□□ 2.58
COL17A1Q9UMD9 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
COL17A1Q9UMD9 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
COL17A1Q9UMD9 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
COL17A1Q9UMD9 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC31.14■■■□□ 2.58
COL17A1Q9UMD9 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC31.14■■■□□ 2.58
COL17A1Q9UMD9 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC31.14■■■□□ 2.58
COL17A1Q9UMD9 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC31.14■■■□□ 2.58
COL17A1Q9UMD9 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
COL17A1Q9UMD9 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC31.14■■■□□ 2.58
COL17A1Q9UMD9 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC31.14■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 311.8 ms