RNA–Protein interactions for RNA: ENST00000616395.4

TRAPPC3-209, Transcript of trafficking protein particle complex 3, humanhuman

TSL 3 BASIC

Gene TRAPPC3, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-209ENST00000616395 NISCHQ9Y2I1 1504 aa44.87■■■■■ 4.77
TRAPPC3-209ENST00000616395 ABCC9O60706 1549 aa41.43■■■■■ 4.22
TRAPPC3-209ENST00000616395 CCDC180Q9P1Z9 1646 aa40.55■■■■■ 4.08
TRAPPC3-209ENST00000616395 DNAJC5BQ9UF47 199 aa39.63■■■■□ 3.93
TRAPPC3-209ENST00000616395 RB1CC1Q8TDY2 1594 aa39.03■■■■□ 3.84
TRAPPC3-209ENST00000616395 NACADO15069 1562 aa38.55■■■■□ 3.76
TRAPPC3-209ENST00000616395 PABPN1Q86U42 306 aaKnown RBP eCLIP38.48■■■■□ 3.75
TRAPPC3-209ENST00000616395 DCAF8L2P0C7V8 631 aa38.28■■■■□ 3.72
TRAPPC3-209ENST00000616395 UNC13AQ9UPW8 1703 aa38.12■■■■□ 3.69
TRAPPC3-209ENST00000616395 BICRAQ9NZM4 1560 aa37.95■■■■□ 3.67
TRAPPC3-209ENST00000616395 MYO15BQ96JP2 1530 aa37.74■■■■□ 3.63
TRAPPC3-209ENST00000616395 CECR2Q9BXF3 1484 aa37.39■■■■□ 3.58
TRAPPC3-209ENST00000616395 CC2D2AQ9P2K1 1620 aa37.35■■■■□ 3.57
TRAPPC3-209ENST00000616395 SHROOM4Q9ULL8 1493 aa37.3■■■■□ 3.56
TRAPPC3-209ENST00000616395 EIF4G1Q04637 1599 aaKnown RBP37.07■■■■□ 3.53
TRAPPC3-209ENST00000616395 ZCCHC6Q5VYS8 1495 aaKnown RBP37■■■■□ 3.51
TRAPPC3-209ENST00000616395 SCRIBQ14160 1630 aa36.97■■■■□ 3.51
TRAPPC3-209ENST00000616395 DCAF1Q9Y4B6 1507 aa36.97■■■■□ 3.51
TRAPPC3-209ENST00000616395 DNAJC5Q9H3Z4 198 aa36.93■■■■□ 3.5
TRAPPC3-209ENST00000616395 CUX2O14529 1486 aa35.99■■■■□ 3.35
TRAPPC3-209ENST00000616395 ERCC6Q03468 1493 aa35.81■■■■□ 3.32
TRAPPC3-209ENST00000616395 NCAPD3P42695 1498 aa35.63■■■■□ 3.29
TRAPPC3-209ENST00000616395 ATAD2BQ9ULI0 1458 aa35.43■■■■□ 3.26
TRAPPC3-209ENST00000616395 NESP48681 1621 aa35.37■■■■□ 3.25
TRAPPC3-209ENST00000616395 HMGXB3Q12766 1538 aa35.26■■■■□ 3.24
TRAPPC3-209ENST00000616395 SMARCA2P51531 1590 aa35.24■■■■□ 3.23
TRAPPC3-209ENST00000616395 SMARCA4P51532 1647 aa35.15■■■■□ 3.22
TRAPPC3-209ENST00000616395 THOC2Q8NI27 1593 aaKnown RBP35.12■■■■□ 3.21
TRAPPC3-209ENST00000616395 BAZ1BQ9UIG0 1483 aaKnown RBP35.03■■■■□ 3.2
TRAPPC3-209ENST00000616395 TRIM41Q8WV44 630 aa35.01■■■■□ 3.19
TRAPPC3-209ENST00000616395 LAMC3Q9Y6N6 1575 aa34.93■■■■□ 3.18
TRAPPC3-209ENST00000616395 BAZ1AQ9NRL2 1556 aaPredicted RBP34.87■■■■□ 3.17
TRAPPC3-209ENST00000616395 KIF21AQ7Z4S6 1674 aa34.82■■■■□ 3.16
TRAPPC3-209ENST00000616395 PEG3Q9GZU2 1588 aa34.8■■■■□ 3.16
TRAPPC3-209ENST00000616395 PDS5BQ9NTI5 1447 aa34.78■■■■□ 3.16
TRAPPC3-209ENST00000616395 MROH2BQ7Z745 1585 aa34.59■■■■□ 3.13
TRAPPC3-209ENST00000616395 MRC2Q9UBG0 1479 aa34.54■■■■□ 3.12
TRAPPC3-209ENST00000616395 CADPSQ9ULU8 1353 aa34.52■■■■□ 3.12
TRAPPC3-209ENST00000616395 WDR62O43379 1518 aa34.47■■■■□ 3.11
TRAPPC3-209ENST00000616395 OSCARQ8IYS5 282 aa34.25■■■■□ 3.07
TRAPPC3-209ENST00000616395 CEP164Q9UPV0 1460 aa34.24■■■■□ 3.07
TRAPPC3-209ENST00000616395 FANCD2Q9BXW9 1451 aa34.14■■■■□ 3.06
TRAPPC3-209ENST00000616395 WIZO95785 1651 aa34.11■■■■□ 3.05
TRAPPC3-209ENST00000616395 CFTRP13569 1480 aa33.95■■■■□ 3.03
TRAPPC3-209ENST00000616395 URB2Q14146 1524 aaKnown RBP33.92■■■■□ 3.02
TRAPPC3-209ENST00000616395 RIMBP3CA6NJZ7 1639 aa33.88■■■■□ 3.01
TRAPPC3-209ENST00000616395 RIMBP3BA6NNM3 1639 aa33.88■■■■□ 3.01
TRAPPC3-209ENST00000616395 RIMBP3Q9UFD9 1639 aa33.88■■■■□ 3.01
TRAPPC3-209ENST00000616395 ARHGEF11O15085 1522 aa33.69■■■□□ 2.98
TRAPPC3-209ENST00000616395 ZNF608Q9ULD9 1512 aaPredicted RBP33.64■■■□□ 2.98
TRAPPC3-209ENST00000616395 TOP2AP11388 1531 aaKnown RBP33.61■■■□□ 2.97
TRAPPC3-209ENST00000616395 RSF1Q96T23 1441 aaPredicted RBP33.58■■■□□ 2.97
TRAPPC3-209ENST00000616395 IFT140Q96RY7 1462 aa33.57■■■□□ 2.96
TRAPPC3-209ENST00000616395 CYB5RLQ6IPT4 315 aa33.53■■■□□ 2.96
TRAPPC3-209ENST00000616395 PRDM2Q13029 1718 aa33.45■■■□□ 2.95
TRAPPC3-209ENST00000616395 TRHP20396 242 aaPredicted RBP33.42■■■□□ 2.94
TRAPPC3-209ENST00000616395 TOPBP1Q92547 1522 aa33.4■■■□□ 2.94
TRAPPC3-209ENST00000616395 EIF4G3O43432 1585 aaKnown RBP33.37■■■□□ 2.93
TRAPPC3-209ENST00000616395 ARAP1Q96P48 1450 aa33.32■■■□□ 2.92
TRAPPC3-209ENST00000616395 CCDC88BA6NC98 1476 aa33.27■■■□□ 2.92
TRAPPC3-209ENST00000616395 CHD1O14646 1710 aa33.26■■■□□ 2.92
TRAPPC3-209ENST00000616395 AQRO60306 1485 aaKnown RBP eCLIP33.24■■■□□ 2.915e-8■■■■■ 40.7
TRAPPC3-209ENST00000616395 ABCC8Q09428 1581 aa33.22■■■□□ 2.91
TRAPPC3-209ENST00000616395 FBLN2P98095 1184 aa33.19■■■□□ 2.9
TRAPPC3-209ENST00000616395 DNMBPQ6XZF7 1577 aa33.18■■■□□ 2.9
TRAPPC3-209ENST00000616395 TARBP1Q13395 1621 aaKnown RBP33.15■■■□□ 2.9
TRAPPC3-209ENST00000616395 AEBP2Q6ZN18 517 aaPredicted RBP33.02■■■□□ 2.88
TRAPPC3-209ENST00000616395 POLA1P09884 1462 aaPredicted RBP33.01■■■□□ 2.87
TRAPPC3-209ENST00000616395 RAD54L2Q9Y4B4 1467 aa32.92■■■□□ 2.86
TRAPPC3-209ENST00000616395 TDRD9Q8NDG6 1382 aaKnown RBP32.92■■■□□ 2.86
TRAPPC3-209ENST00000616395 CLASP1Q7Z460 1538 aa32.89■■■□□ 2.86
TRAPPC3-209ENST00000616395 SNAPC4Q5SXM2 1469 aa32.86■■■□□ 2.85
TRAPPC3-209ENST00000616395 SOGA1O94964 1423 aa32.85■■■□□ 2.85
TRAPPC3-209ENST00000616395 CHMP7Q8WUX9 453 aaPredicted RBP32.79■■■□□ 2.84
TRAPPC3-209ENST00000616395 SYNJ1O43426 1573 aa32.77■■■□□ 2.84
TRAPPC3-209ENST00000616395 MAGI1Q96QZ7 1491 aaPredicted RBP32.71■■■□□ 2.83
TRAPPC3-209ENST00000616395 WDR97A6NE52 1622 aa32.7■■■□□ 2.83
TRAPPC3-209ENST00000616395 FGD5Q6ZNL6 1462 aa32.69■■■□□ 2.82
TRAPPC3-209ENST00000616395 GRIN2BQ13224 1484 aa32.64■■■□□ 2.82
TRAPPC3-209ENST00000616395 SYNJ2O15056 1496 aa32.62■■■□□ 2.81
TRAPPC3-209ENST00000616395 GAPVD1Q14C86 1478 aa32.61■■■□□ 2.81
TRAPPC3-209ENST00000616395 CUX1P39880 1505 aa32.53■■■□□ 2.8
TRAPPC3-209ENST00000616395 PBRM1Q86U86 1689 aa32.42■■■□□ 2.78
TRAPPC3-209ENST00000616395 ERCC6L2Q5T890 1561 aa32.36■■■□□ 2.77
TRAPPC3-209ENST00000616395 ABCA5Q8WWZ7 1642 aa32.27■■■□□ 2.76
TRAPPC3-209ENST00000616395 ABCA10Q8WWZ4 1543 aa32.25■■■□□ 2.75
TRAPPC3-209ENST00000616395 GRIN2AQ12879 1464 aa32.22■■■□□ 2.75
TRAPPC3-209ENST00000616395 CEP170Q5SW79 1584 aa32.2■■■□□ 2.75
TRAPPC3-209ENST00000616395 NUP160Q12769 1436 aa32.15■■■□□ 2.74
TRAPPC3-209ENST00000616395 ADAMTS12P58397 1594 aa32.09■■■□□ 2.73
TRAPPC3-209ENST00000616395 KIF13AQ9H1H9 1805 aa32.07■■■□□ 2.73
TRAPPC3-209ENST00000616395 SHROOM2Q13796 1616 aa32.07■■■□□ 2.72
TRAPPC3-209ENST00000616395 FHAD1B1AJZ9 1412 aa31.98■■■□□ 2.71
TRAPPC3-209ENST00000616395 WRNQ14191 1432 aaPredicted RBP eCLIP31.98■■■□□ 2.71
TRAPPC3-209ENST00000616395 PRG4Q92954 1404 aaPredicted RBP31.92■■■□□ 2.7
TRAPPC3-209ENST00000616395 FAM69CQ0P6D2 419 aa31.89■■■□□ 2.7
TRAPPC3-209ENST00000616395 ABCC10Q5T3U5 1492 aa31.85■■■□□ 2.69
TRAPPC3-209ENST00000616395 JPH4Q96JJ6 628 aa31.83■■■□□ 2.69
TRAPPC3-209ENST00000616395 ERICH3Q5RHP9 1530 aa31.81■■■□□ 2.68
TRAPPC3-209ENST00000616395 KDM4FA0A1W2PPD8 638 aa31.78■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms