RNA–Protein interactions for RNA: ENST00000311832.5

COMMD1-201, Transcript of copper metabolism domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COMMD1, Length 911 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD1-201ENST00000311832 NISCHQ9Y2I1 1504 aa46.74■■■■■ 5.07
COMMD1-201ENST00000311832 CCDC180Q9P1Z9 1646 aa41.8■■■■■ 4.28
COMMD1-201ENST00000311832 ABCC9O60706 1549 aa41.23■■■■■ 4.19
COMMD1-201ENST00000311832 RB1CC1Q8TDY2 1594 aa39.46■■■■□ 3.91
COMMD1-201ENST00000311832 NACADO15069 1562 aa39.31■■■■□ 3.88
COMMD1-201ENST00000311832 DCAF8L2P0C7V8 631 aa39.03■■■■□ 3.84
COMMD1-201ENST00000311832 MYO15BQ96JP2 1530 aa38.94■■■■□ 3.82
COMMD1-201ENST00000311832 ZCCHC6Q5VYS8 1495 aaKnown RBP38.87■■■■□ 3.81
COMMD1-201ENST00000311832 UNC13AQ9UPW8 1703 aa38.8■■■■□ 3.8
COMMD1-201ENST00000311832 DCAF1Q9Y4B6 1507 aa38.64■■■■□ 3.78
COMMD1-201ENST00000311832 BICRAQ9NZM4 1560 aa38.41■■■■□ 3.74
COMMD1-201ENST00000311832 PABPN1Q86U42 306 aaKnown RBP eCLIP38.39■■■■□ 3.74
COMMD1-201ENST00000311832 DNAJC5BQ9UF47 199 aa38.24■■■■□ 3.71
COMMD1-201ENST00000311832 SCRIBQ14160 1630 aa38.1■■■■□ 3.69
COMMD1-201ENST00000311832 SHROOM4Q9ULL8 1493 aa37.81■■■■□ 3.64
COMMD1-201ENST00000311832 EIF4G1Q04637 1599 aaKnown RBP37.37■■■■□ 3.57
COMMD1-201ENST00000311832 CC2D2AQ9P2K1 1620 aa37.33■■■■□ 3.57
COMMD1-201ENST00000311832 CECR2Q9BXF3 1484 aa37.06■■■■□ 3.52
COMMD1-201ENST00000311832 SMARCA4P51532 1647 aa36.41■■■■□ 3.42
COMMD1-201ENST00000311832 NCAPD3P42695 1498 aa36.26■■■■□ 3.4
COMMD1-201ENST00000311832 ATAD2BQ9ULI0 1458 aa36.24■■■■□ 3.39
COMMD1-201ENST00000311832 BAZ1AQ9NRL2 1556 aaPredicted RBP36.23■■■■□ 3.39
COMMD1-201ENST00000311832 SMARCA2P51531 1590 aa36.16■■■■□ 3.38
COMMD1-201ENST00000311832 HMGXB3Q12766 1538 aa36.09■■■■□ 3.37
COMMD1-201ENST00000311832 MROH2BQ7Z745 1585 aa36.06■■■■□ 3.36
COMMD1-201ENST00000311832 PEG3Q9GZU2 1588 aa36.05■■■■□ 3.36
COMMD1-201ENST00000311832 BAZ1BQ9UIG0 1483 aaKnown RBP35.9■■■■□ 3.34
COMMD1-201ENST00000311832 WIZO95785 1651 aa35.7■■■■□ 3.31
COMMD1-201ENST00000311832 NESP48681 1621 aa35.61■■■■□ 3.29
COMMD1-201ENST00000311832 ERCC6Q03468 1493 aa35.48■■■■□ 3.27
COMMD1-201ENST00000311832 RSF1Q96T23 1441 aaPredicted RBP35.43■■■■□ 3.26
COMMD1-201ENST00000311832 LAMC3Q9Y6N6 1575 aa35.42■■■■□ 3.26
COMMD1-201ENST00000311832 CUX2O14529 1486 aa35.3■■■■□ 3.24
COMMD1-201ENST00000311832 KIF21AQ7Z4S6 1674 aa35.26■■■■□ 3.23
COMMD1-201ENST00000311832 TOP2AP11388 1531 aaKnown RBP35.22■■■■□ 3.23
COMMD1-201ENST00000311832 THOC2Q8NI27 1593 aaKnown RBP35.21■■■■□ 3.23
COMMD1-201ENST00000311832 CADPSQ9ULU8 1353 aa35.14■■■■□ 3.22
COMMD1-201ENST00000311832 PDS5BQ9NTI5 1447 aa35.08■■■■□ 3.21
COMMD1-201ENST00000311832 CFTRP13569 1480 aa34.9■■■■□ 3.18
COMMD1-201ENST00000311832 MRC2Q9UBG0 1479 aa34.83■■■■□ 3.17
COMMD1-201ENST00000311832 CCDC88BA6NC98 1476 aa34.78■■■■□ 3.16
COMMD1-201ENST00000311832 FANCD2Q9BXW9 1451 aa34.78■■■■□ 3.16
COMMD1-201ENST00000311832 WDR62O43379 1518 aa34.78■■■■□ 3.16
COMMD1-201ENST00000311832 PRDM2Q13029 1718 aa34.78■■■■□ 3.16
COMMD1-201ENST00000311832 CEP164Q9UPV0 1460 aa34.78■■■■□ 3.16
COMMD1-201ENST00000311832 DNAJC5Q9H3Z4 198 aa34.66■■■■□ 3.14
COMMD1-201ENST00000311832 URB2Q14146 1524 aaKnown RBP34.53■■■■□ 3.12
COMMD1-201ENST00000311832 TOPBP1Q92547 1522 aa34.22■■■■□ 3.07
COMMD1-201ENST00000311832 DNMBPQ6XZF7 1577 aa34.15■■■■□ 3.06
COMMD1-201ENST00000311832 SUPT5HO00267 1087 aaKnown RBP34.11■■■■□ 3.05
COMMD1-201ENST00000311832 ABCC8Q09428 1581 aa34.09■■■■□ 3.05
COMMD1-201ENST00000311832 IFT140Q96RY7 1462 aa34.05■■■■□ 3.04
COMMD1-201ENST00000311832 ZNF608Q9ULD9 1512 aaPredicted RBP34.01■■■■□ 3.04
COMMD1-201ENST00000311832 TARBP1Q13395 1621 aaKnown RBP33.95■■■■□ 3.03
COMMD1-201ENST00000311832 EIF4G3O43432 1585 aaKnown RBP33.9■■■■□ 3.02
COMMD1-201ENST00000311832 POLA1P09884 1462 aaPredicted RBP33.9■■■■□ 3.02
COMMD1-201ENST00000311832 CUX1P39880 1505 aa33.85■■■■□ 3.01
COMMD1-201ENST00000311832 RAD54L2Q9Y4B4 1467 aa33.76■■■■□ 3
COMMD1-201ENST00000311832 FGD5Q6ZNL6 1462 aa33.76■■■□□ 2.99
COMMD1-201ENST00000311832 AQRO60306 1485 aaKnown RBP eCLIP33.72■■■□□ 2.99
COMMD1-201ENST00000311832 SOGA1O94964 1423 aa33.68■■■□□ 2.98
COMMD1-201ENST00000311832 OSCARQ8IYS5 282 aa33.65■■■□□ 2.98
COMMD1-201ENST00000311832 WDR97A6NE52 1622 aa33.64■■■□□ 2.98
COMMD1-201ENST00000311832 CHD1O14646 1710 aa33.6■■■□□ 2.97
COMMD1-201ENST00000311832 TDRD9Q8NDG6 1382 aaKnown RBP33.56■■■□□ 2.96
COMMD1-201ENST00000311832 BIVM-ERCC5R4GMW8 1640 aa33.49■■■□□ 2.95
COMMD1-201ENST00000311832 SYNJ1O43426 1573 aa33.46■■■□□ 2.95
COMMD1-201ENST00000311832 TOP2BQ02880 1626 aa33.44■■■□□ 2.94
COMMD1-201ENST00000311832 PBRM1Q86U86 1689 aa33.42■■■□□ 2.94
COMMD1-201ENST00000311832 SNAPC4Q5SXM2 1469 aa33.42■■■□□ 2.94
COMMD1-201ENST00000311832 ABCA10Q8WWZ4 1543 aa33.39■■■□□ 2.94
COMMD1-201ENST00000311832 ABCA5Q8WWZ7 1642 aa33.39■■■□□ 2.93
COMMD1-201ENST00000311832 RIMBP3CA6NJZ7 1639 aa33.38■■■□□ 2.93
COMMD1-201ENST00000311832 RIMBP3BA6NNM3 1639 aa33.38■■■□□ 2.93
COMMD1-201ENST00000311832 RIMBP3Q9UFD9 1639 aa33.38■■■□□ 2.93
COMMD1-201ENST00000311832 WRNQ14191 1432 aaPredicted RBP eCLIP33.37■■■□□ 2.93
COMMD1-201ENST00000311832 GRIN2BQ13224 1484 aa33.35■■■□□ 2.93
COMMD1-201ENST00000311832 MAGI1Q96QZ7 1491 aaPredicted RBP33.31■■■□□ 2.92
COMMD1-201ENST00000311832 TRIM41Q8WV44 630 aa33.31■■■□□ 2.92
COMMD1-201ENST00000311832 GAPVD1Q14C86 1478 aa33.31■■■□□ 2.92
COMMD1-201ENST00000311832 ARHGEF11O15085 1522 aa33.27■■■□□ 2.92
COMMD1-201ENST00000311832 FBLN2P98095 1184 aa33.26■■■□□ 2.91
COMMD1-201ENST00000311832 SYNJ2O15056 1496 aa33.2■■■□□ 2.91
COMMD1-201ENST00000311832 CLASP1Q7Z460 1538 aa33.18■■■□□ 2.9
COMMD1-201ENST00000311832 CHMP7Q8WUX9 453 aaPredicted RBP33.11■■■□□ 2.89
COMMD1-201ENST00000311832 ADAMTS12P58397 1594 aa33.08■■■□□ 2.89
COMMD1-201ENST00000311832 ARAP1Q96P48 1450 aa32.99■■■□□ 2.87
COMMD1-201ENST00000311832 ERICH3Q5RHP9 1530 aa32.98■■■□□ 2.87
COMMD1-201ENST00000311832 GRIN2AQ12879 1464 aa32.96■■■□□ 2.87
COMMD1-201ENST00000311832 CEP170Q5SW79 1584 aa32.9■■■□□ 2.86
COMMD1-201ENST00000311832 FHAD1B1AJZ9 1412 aa32.88■■■□□ 2.85
COMMD1-201ENST00000311832 CYB5RLQ6IPT4 315 aa32.86■■■□□ 2.85
COMMD1-201ENST00000311832 NUP160Q12769 1436 aa32.84■■■□□ 2.85
COMMD1-201ENST00000311832 ERCC6L2Q5T890 1561 aa32.73■■■□□ 2.83
COMMD1-201ENST00000311832 SHROOM2Q13796 1616 aa32.73■■■□□ 2.83
COMMD1-201ENST00000311832 KIF27Q86VH2 1401 aa32.67■■■□□ 2.82
COMMD1-201ENST00000311832 CUL7Q14999 1698 aa32.65■■■□□ 2.82
COMMD1-201ENST00000311832 IGF1RP08069 1367 aa32.63■■■□□ 2.81
COMMD1-201ENST00000311832 RUSC2Q8N2Y8 1516 aa32.61■■■□□ 2.81
COMMD1-201ENST00000311832 PRG4Q92954 1404 aaPredicted RBP32.43■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms