Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 AC138907.5-202ENST00000569484 235 ntBASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 AC010141.2-201ENST00000452426 721 ntBASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 UBE2DNL-204ENST00000602536 740 ntBASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC27.59■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC27.58■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 ME2-216ENST00000639850 2331 ntTSL 5 BASIC27.58■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC27.58■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC27.58■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC27.58■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC27.58■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC27.58■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC27.58■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC27.58■■■□□ 2
SENP3-EIF4A1A0A087X0R7 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 STX7-201ENST00000367937 1090 ntTSL 5 BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 DBI-210ENST00000542275 757 ntTSL 5 BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 AC073314.1-201ENST00000568729 2216 ntBASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC27.57■■■□□ 2
SENP3-EIF4A1A0A087X0R7 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
SENP3-EIF4A1A0A087X0R7 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
SENP3-EIF4A1A0A087X0R7 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SENP3-EIF4A1A0A087X0R7 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC27.56■■■□□ 2
SENP3-EIF4A1A0A087X0R7 AC011767.1-201ENST00000617410 1153 ntBASIC27.56■■■□□ 2
SENP3-EIF4A1A0A087X0R7 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SENP3-EIF4A1A0A087X0R7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC27.56■■■□□ 2
SENP3-EIF4A1A0A087X0R7 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SENP3-EIF4A1A0A087X0R7 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SENP3-EIF4A1A0A087X0R7 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC27.56■■■□□ 2
SENP3-EIF4A1A0A087X0R7 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 METTL26-203ENST00000397664 604 ntTSL 2 BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 AC069152.1-201ENST00000438030 544 ntBASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC27.55■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms