Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.65■□□□□ 0.9
LDB2O43679 AC022517.1-201ENST00000592429 346 ntBASIC20.65■□□□□ 0.9
LDB2O43679 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDB2O43679 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LDB2O43679 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
LDB2O43679 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDB2O43679 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
LDB2O43679 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.64■□□□□ 0.9
LDB2O43679 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
LDB2O43679 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.64■□□□□ 0.89
LDB2O43679 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LDB2O43679 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LDB2O43679 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.64■□□□□ 0.89
LDB2O43679 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.64■□□□□ 0.89
LDB2O43679 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
LDB2O43679 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LDB2O43679 FEM1AP1-201ENST00000431297 1995 ntBASIC20.64■□□□□ 0.89
LDB2O43679 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.64■□□□□ 0.89
LDB2O43679 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LDB2O43679 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LDB2O43679 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LDB2O43679 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.63■□□□□ 0.89
LDB2O43679 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
LDB2O43679 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LDB2O43679 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
LDB2O43679 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LDB2O43679 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.63■□□□□ 0.89
LDB2O43679 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.63■□□□□ 0.89
LDB2O43679 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.63■□□□□ 0.89
LDB2O43679 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
LDB2O43679 AC027702.1-201ENST00000563810 1770 ntBASIC20.63■□□□□ 0.89
LDB2O43679 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LDB2O43679 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LDB2O43679 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.63■□□□□ 0.89
LDB2O43679 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
LDB2O43679 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDB2O43679 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.62■□□□□ 0.89
LDB2O43679 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.62■□□□□ 0.89
LDB2O43679 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LDB2O43679 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDB2O43679 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.62■□□□□ 0.89
LDB2O43679 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
LDB2O43679 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.62■□□□□ 0.89
LDB2O43679 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDB2O43679 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDB2O43679 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
LDB2O43679 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.62■□□□□ 0.89
LDB2O43679 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LDB2O43679 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDB2O43679 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
LDB2O43679 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LDB2O43679 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.62■□□□□ 0.89
LDB2O43679 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.62■□□□□ 0.89
LDB2O43679 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
LDB2O43679 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.61■□□□□ 0.89
LDB2O43679 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
LDB2O43679 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB2O43679 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB2O43679 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB2O43679 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
LDB2O43679 FP700111.2-201ENST00000619190 1892 ntBASIC20.61■□□□□ 0.89
LDB2O43679 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
LDB2O43679 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB2O43679 DUX4L16-201ENST00000555130 1264 ntBASIC20.61■□□□□ 0.89
LDB2O43679 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.61■□□□□ 0.89
LDB2O43679 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.61■□□□□ 0.89
LDB2O43679 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.61■□□□□ 0.89
LDB2O43679 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.61■□□□□ 0.89
LDB2O43679 AC011767.1-201ENST00000617410 1153 ntBASIC20.61■□□□□ 0.89
LDB2O43679 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.61■□□□□ 0.89
LDB2O43679 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB2O43679 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LDB2O43679 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB2O43679 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB2O43679 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.61■□□□□ 0.89
LDB2O43679 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LDB2O43679 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
LDB2O43679 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
LDB2O43679 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.6■□□□□ 0.89
LDB2O43679 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.6■□□□□ 0.89
LDB2O43679 AC007322.3-201ENST00000426526 701 ntBASIC20.6■□□□□ 0.89
LDB2O43679 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.6■□□□□ 0.89
LDB2O43679 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
LDB2O43679 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.6■□□□□ 0.89
LDB2O43679 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LDB2O43679 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
LDB2O43679 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.6■□□□□ 0.89
LDB2O43679 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LDB2O43679 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
LDB2O43679 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDB2O43679 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
LDB2O43679 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDB2O43679 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LDB2O43679 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDB2O43679 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDB2O43679 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDB2O43679 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.59■□□□□ 0.89
LDB2O43679 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.59■□□□□ 0.89
LDB2O43679 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDB2O43679 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms