Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 YEF3YLR249W 3135 nt3.34□□□□□ -1.88
SSM4P40318 RRM3YHR031C 2172 nt3.33□□□□□ -1.88
SSM4P40318 SKO1YNL167C 1944 nt3.33□□□□□ -1.88
SSM4P40318 COG2YGR120C 789 nt3.33□□□□□ -1.88
SSM4P40318 CCW14YLR390W-A 717 nt3.33□□□□□ -1.88
SSM4P40318 YBR051WYBR051W 351 nt3.33□□□□□ -1.88
SSM4P40318 ADY4YLR227C 1482 nt3.33□□□□□ -1.88
SSM4P40318 SVL3YPL032C 2478 nt3.33□□□□□ -1.88
SSM4P40318 ECM29YHL030W 5607 nt3.32□□□□□ -1.88
SSM4P40318 DYN1YKR054C 12279 nt3.32□□□□□ -1.88
SSM4P40318 SEC7YDR170C 6030 nt3.32□□□□□ -1.88
SSM4P40318 YGL159WYGL159W 1113 nt3.32□□□□□ -1.88
SSM4P40318 YGR109W-AYGR109W-A 873 nt3.32□□□□□ -1.88
SSM4P40318 RPL27AYHR010W 411 nt3.32□□□□□ -1.88
SSM4P40318 YIL082WYIL082W 873 nt3.32□□□□□ -1.88
SSM4P40318 YIR036W-AYIR036W-A 402 nt3.32□□□□□ -1.88
SSM4P40318 BET3YKR068C 582 nt3.32□□□□□ -1.88
SSM4P40318 YLR154C-HYLR154C-H 132 nt3.32□□□□□ -1.88
SSM4P40318 YLR156C-AYLR156C-A 132 nt3.32□□□□□ -1.88
SSM4P40318 YLR157C-CYLR157C-C 132 nt3.32□□□□□ -1.88
SSM4P40318 YLR159C-AYLR159C-A 132 nt3.32□□□□□ -1.88
SSM4P40318 IRC21YMR073C 606 nt3.32□□□□□ -1.88
SSM4P40318 MUD1YBR119W 897 nt3.32□□□□□ -1.88
SSM4P40318 CLN3YAL040C 1743 nt3.31□□□□□ -1.88
SSM4P40318 BUD4YJR092W 4344 nt3.31□□□□□ -1.88
SSM4P40318 YIR040CYIR040C 333 nt3.31□□□□□ -1.88
SSM4P40318 CSI1YMR025W 888 nt3.31□□□□□ -1.88
SSM4P40318 YNL203CYNL203C 612 nt3.31□□□□□ -1.88
SSM4P40318 MED1YPR070W 1701 nt3.31□□□□□ -1.88
SSM4P40318 MAL33YBR297W 1407 nt3.31□□□□□ -1.88
SSM4P40318 EXO84YBR102C 2262 nt3.31□□□□□ -1.88
SSM4P40318 JJJ2YJL162C 1752 nt3.3□□□□□ -1.88
SSM4P40318 YNL193WYNL193W 1677 nt3.3□□□□□ -1.88
SSM4P40318 FAR7YFR008W 666 nt3.3□□□□□ -1.88
SSM4P40318 LST7YGR057C 729 nt3.3□□□□□ -1.88
SSM4P40318 YJR087WYJR087W 351 nt3.3□□□□□ -1.88
SSM4P40318 SRP21YKL122C 504 nt3.3□□□□□ -1.88
SSM4P40318 VMA6YLR447C 1038 nt3.3□□□□□ -1.88
SSM4P40318 Q0017Q0017 162 nt3.3□□□□□ -1.88
SSM4P40318 YDR034C-DYDR034C-D 5313 nt3.3□□□□□ -1.88
SSM4P40318 SRB4YER022W 2064 nt3.3□□□□□ -1.88
SSM4P40318 SAP190YKR028W 3102 nt3.3□□□□□ -1.88
SSM4P40318 ATP22YDR350C 2055 nt3.29□□□□□ -1.88
SSM4P40318 UBX3YDL091C 1368 nt3.29□□□□□ -1.88
SSM4P40318 15S_rRNA15S_rRNA 1649 nt3.29□□□□□ -1.88
SSM4P40318 VMA21YGR105W 234 nt3.29□□□□□ -1.88
SSM4P40318 CKA1YIL035C 1119 nt3.29□□□□□ -1.88
SSM4P40318 ICY1YMR195W 384 nt3.29□□□□□ -1.88
SSM4P40318 NGL1YOL042W 1092 nt3.29□□□□□ -1.88
SSM4P40318 CSM4YPL200W 471 nt3.29□□□□□ -1.88
SSM4P40318 YBR062CYBR062C 543 nt3.29□□□□□ -1.88
SSM4P40318 YBR300CYBR300C 498 nt3.29□□□□□ -1.88
SSM4P40318 YDR338CYDR338C 2088 nt3.29□□□□□ -1.88
SSM4P40318 MFB1YDR219C 1398 nt3.28□□□□□ -1.88
SSM4P40318 SSE1YPL106C 2082 nt3.28□□□□□ -1.88
SSM4P40318 snR5snR5 204 nt3.28□□□□□ -1.88
SSM4P40318 YER091C-AYER091C-A 222 nt3.28□□□□□ -1.88
SSM4P40318 YLR154W-EYLR154W-E 204 nt3.28□□□□□ -1.88
SSM4P40318 RPS16AYMR143W 432 nt3.28□□□□□ -1.88
SSM4P40318 YNL043CYNL043C 321 nt3.28□□□□□ -1.88
SSM4P40318 SCD5YOR329C 2619 nt3.28□□□□□ -1.88
SSM4P40318 YFR016CYFR016C 3702 nt3.28□□□□□ -1.88
SSM4P40318 YKL100CYKL100C 1764 nt3.28□□□□□ -1.88
SSM4P40318 snR9snR9 187 nt3.27□□□□□ -1.89
SSM4P40318 YHR052W-AYHR052W-A 195 nt3.27□□□□□ -1.89
SSM4P40318 YHR054W-AYHR054W-A 195 nt3.27□□□□□ -1.89
SSM4P40318 YIR020C-BYIR020C-B 735 nt3.27□□□□□ -1.89
SSM4P40318 YJL086CYJL086C 369 nt3.27□□□□□ -1.89
SSM4P40318 MCR1YKL150W 909 nt3.27□□□□□ -1.89
SSM4P40318 KTI11YBL071W-A 249 nt3.27□□□□□ -1.89
SSM4P40318 RIF1YBR275C 5751 nt3.27□□□□□ -1.89
SSM4P40318 PCK1YKR097W 1650 nt3.27□□□□□ -1.89
SSM4P40318 VHR2YER064C 1518 nt3.27□□□□□ -1.89
SSM4P40318 UTP15YMR093W 1542 nt3.27□□□□□ -1.89
SSM4P40318 CDC123YLR215C 1083 nt3.26□□□□□ -1.89
SSM4P40318 CWC24YLR323C 780 nt3.26□□□□□ -1.89
SSM4P40318 YAP7YOL028C 738 nt3.26□□□□□ -1.89
SSM4P40318 LCL1YPL056C 306 nt3.26□□□□□ -1.89
SSM4P40318 NCS2YNL119W 1482 nt3.26□□□□□ -1.89
SSM4P40318 SCY1YGL083W 2415 nt3.26□□□□□ -1.89
SSM4P40318 SWC4YGR002C 1431 nt3.25□□□□□ -1.89
SSM4P40318 UFD4YKL010C 4452 nt3.25□□□□□ -1.89
SSM4P40318 TDA2YER071C 381 nt3.25□□□□□ -1.89
SSM4P40318 YJL119CYJL119C 324 nt3.25□□□□□ -1.89
SSM4P40318 YKL023C-AYKL023C-A 228 nt3.25□□□□□ -1.89
SSM4P40318 YMR181CYMR181C 465 nt3.25□□□□□ -1.89
SSM4P40318 YMR254CYMR254C 309 nt3.25□□□□□ -1.89
SSM4P40318 NEL1YHR035W 1893 nt3.25□□□□□ -1.89
SSM4P40318 TFC3YAL001C 3483 nt3.25□□□□□ -1.89
SSM4P40318 TFB1YDR311W 1929 nt3.25□□□□□ -1.89
SSM4P40318 ARK1YNL020C 1917 nt3.25□□□□□ -1.89
SSM4P40318 SSP1YHR184W 1716 nt3.25□□□□□ -1.89
SSM4P40318 TMA64YDR117C 1698 nt3.24□□□□□ -1.89
SSM4P40318 RPS24AYER074W 408 nt3.24□□□□□ -1.89
SSM4P40318 ACF4YJR083C 930 nt3.24□□□□□ -1.89
SSM4P40318 COX8YLR395C 237 nt3.24□□□□□ -1.89
SSM4P40318 SAS2YMR127C 1017 nt3.24□□□□□ -1.89
SSM4P40318 SFM1YOR021C 642 nt3.24□□□□□ -1.89
SSM4P40318 PIS1YPR113W 663 nt3.24□□□□□ -1.89
SSM4P40318 PSK1YAL017W 4071 nt3.24□□□□□ -1.89
Retrieved 100 of 7,029 protein–RNA pairs in 24.1 ms