Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 YHR213WYHR213W 597 nt3.3□□□□□ -1.88
RPN11P43588 YIL046W-AYIL046W-A 165 nt3.3□□□□□ -1.88
RPN11P43588 YIR020C-BYIR020C-B 735 nt3.3□□□□□ -1.88
RPN11P43588 RPL17AYKL180W 555 nt3.3□□□□□ -1.88
RPN11P43588 YAR062WYAR062W 597 nt3.3□□□□□ -1.88
RPN11P43588 AFT2YPL202C 1251 nt3.3□□□□□ -1.88
RPN11P43588 LST4YKL176C 2487 nt3.3□□□□□ -1.88
RPN11P43588 YCR108CYCR108C 192 nt3.29□□□□□ -1.88
RPN11P43588 YDL050CYDL050C 372 nt3.29□□□□□ -1.88
RPN11P43588 snR84snR84 550 nt3.29□□□□□ -1.88
RPN11P43588 FMN1YDR236C 657 nt3.29□□□□□ -1.88
RPN11P43588 NCB2YDR397C 441 nt3.29□□□□□ -1.88
RPN11P43588 VAR1Q0140 1197 nt3.29□□□□□ -1.88
RPN11P43588 YGR126WYGR126W 693 nt3.29□□□□□ -1.88
RPN11P43588 YKL023C-AYKL023C-A 228 nt3.29□□□□□ -1.88
RPN11P43588 RPL13BYMR142C 600 nt3.29□□□□□ -1.88
RPN11P43588 YPL088WYPL088W 1029 nt3.29□□□□□ -1.88
RPN11P43588 YPL107WYPL107W 747 nt3.29□□□□□ -1.88
RPN11P43588 TRS20YBR254C 528 nt3.29□□□□□ -1.88
RPN11P43588 TOR1YJR066W 7413 nt3.28□□□□□ -1.88
RPN11P43588 RAD5YLR032W 3510 nt3.28□□□□□ -1.88
RPN11P43588 NSA1YGL111W 1392 nt3.28□□□□□ -1.88
RPN11P43588 YDR220CYDR220C 294 nt3.28□□□□□ -1.88
RPN11P43588 MVB12YGR206W 306 nt3.28□□□□□ -1.88
RPN11P43588 YGR290WYGR290W 444 nt3.28□□□□□ -1.88
RPN11P43588 YIL175WYIL175W 318 nt3.28□□□□□ -1.88
RPN11P43588 YJL222W-BYJL222W-B 138 nt3.28□□□□□ -1.88
RPN11P43588 SRP21YKL122C 504 nt3.28□□□□□ -1.88
RPN11P43588 YKL156C-AYKL156C-A 117 nt3.28□□□□□ -1.88
RPN11P43588 YLR297WYLR297W 390 nt3.28□□□□□ -1.88
RPN11P43588 PAI3YMR174C 207 nt3.28□□□□□ -1.88
RPN11P43588 DYN3YMR299C 939 nt3.28□□□□□ -1.88
RPN11P43588 YNL184CYNL184C 327 nt3.28□□□□□ -1.88
RPN11P43588 YOR032W-AYOR032W-A 201 nt3.28□□□□□ -1.88
RPN11P43588 RSA1YPL193W 1146 nt3.28□□□□□ -1.88
RPN11P43588 DUN1YDL101C 1542 nt3.28□□□□□ -1.88
RPN11P43588 YDL016CYDL016C 303 nt3.27□□□□□ -1.89
RPN11P43588 NTF2YER009W 378 nt3.27□□□□□ -1.89
RPN11P43588 TDA2YER071C 381 nt3.27□□□□□ -1.89
RPN11P43588 VTC1YER072W 390 nt3.27□□□□□ -1.89
RPN11P43588 YGR073CYGR073C 372 nt3.27□□□□□ -1.89
RPN11P43588 SLX9YGR081C 633 nt3.27□□□□□ -1.89
RPN11P43588 YHR212CYHR212C 336 nt3.27□□□□□ -1.89
RPN11P43588 RPL17BYJL177W 555 nt3.27□□□□□ -1.89
RPN11P43588 RPA12YJR063W 378 nt3.27□□□□□ -1.89
RPN11P43588 YAR060CYAR060C 336 nt3.27□□□□□ -1.89
RPN11P43588 YNL089CYNL089C 477 nt3.27□□□□□ -1.89
RPN11P43588 YOR364WYOR364W 369 nt3.27□□□□□ -1.89
RPN11P43588 YBR259WYBR259W 2067 nt3.27□□□□□ -1.89
RPN11P43588 ASI3YNL008C 2031 nt3.27□□□□□ -1.89
RPN11P43588 SEC15YGL233W 2733 nt3.27□□□□□ -1.89
RPN11P43588 KRI1YNL308C 1776 nt3.26□□□□□ -1.89
RPN11P43588 ARF1YDL192W 546 nt3.26□□□□□ -1.89
RPN11P43588 SMT3YDR510W 306 nt3.26□□□□□ -1.89
RPN11P43588 AIM11YER093C-A 414 nt3.26□□□□□ -1.89
RPN11P43588 SEC66YBR171W 621 nt3.26□□□□□ -1.89
RPN11P43588 TSC11YER093C 4293 nt3.26□□□□□ -1.89
RPN11P43588 POL4YCR014C 1749 nt3.26□□□□□ -1.89
RPN11P43588 PTP3YER075C 2787 nt3.26□□□□□ -1.89
RPN11P43588 YDR061WYDR061W 1620 nt3.26□□□□□ -1.89
RPN11P43588 NOP12YOL041C 1380 nt3.25□□□□□ -1.89
RPN11P43588 RAD26YJR035W 3258 nt3.25□□□□□ -1.89
RPN11P43588 YLR352WYLR352W 2424 nt3.25□□□□□ -1.89
RPN11P43588 MTR4YJL050W 3222 nt3.25□□□□□ -1.89
RPN11P43588 YGL039WYGL039W 1047 nt3.25□□□□□ -1.89
RPN11P43588 GIC1YHR061C 945 nt3.25□□□□□ -1.89
RPN11P43588 TAP42YMR028W 1101 nt3.25□□□□□ -1.89
RPN11P43588 UBX4YMR067C 1251 nt3.25□□□□□ -1.89
RPN11P43588 LTP1YPR073C 486 nt3.25□□□□□ -1.89
RPN11P43588 15S_rRNA15S_rRNA 1649 nt3.25□□□□□ -1.89
RPN11P43588 RIM13YMR154C 2184 nt3.25□□□□□ -1.89
RPN11P43588 IKI3YLR384C 4050 nt3.24□□□□□ -1.89
RPN11P43588 SCP160YJL080C 3669 nt3.24□□□□□ -1.89
RPN11P43588 YDR115WYDR115W 318 nt3.24□□□□□ -1.89
RPN11P43588 FIN1YDR130C 876 nt3.24□□□□□ -1.89
RPN11P43588 SPT2YER161C 1002 nt3.24□□□□□ -1.89
RPN11P43588 AAD16YFL057C 459 nt3.24□□□□□ -1.89
RPN11P43588 YJR141WYJR141W 1044 nt3.24□□□□□ -1.89
RPN11P43588 YKR033CYKR033C 426 nt3.24□□□□□ -1.89
RPN11P43588 CSI2YOL007C 1026 nt3.24□□□□□ -1.89
RPN11P43588 HHF1YBR009C 312 nt3.24□□□□□ -1.89
RPN11P43588 SRP68YPL243W 1800 nt3.23□□□□□ -1.89
RPN11P43588 CCM1YGR150C 2595 nt3.23□□□□□ -1.89
RPN11P43588 SRD1YCR018C 666 nt3.23□□□□□ -1.89
RPN11P43588 SNA4YDL123W 423 nt3.23□□□□□ -1.89
RPN11P43588 PCL5YHR071W 690 nt3.23□□□□□ -1.89
RPN11P43588 RED1YLR263W 2484 nt3.23□□□□□ -1.89
RPN11P43588 SEC14YMR079W 915 nt3.23□□□□□ -1.89
RPN11P43588 MUB1YMR100W 1863 nt3.23□□□□□ -1.89
RPN11P43588 RPS16AYMR143W 432 nt3.23□□□□□ -1.89
RPN11P43588 YMR181CYMR181C 465 nt3.23□□□□□ -1.89
RPN11P43588 ATX1YNL259C 222 nt3.23□□□□□ -1.89
RPN11P43588 TOP1YOL006C 2310 nt3.23□□□□□ -1.89
RPN11P43588 SLK19YOR195W 2466 nt3.23□□□□□ -1.89
RPN11P43588 YOR277CYOR277C 309 nt3.23□□□□□ -1.89
RPN11P43588 YGR237CYGR237C 2358 nt3.23□□□□□ -1.89
RPN11P43588 GCD6YDR211W 2139 nt3.22□□□□□ -1.89
RPN11P43588 RPF1YHR088W 888 nt3.22□□□□□ -1.89
RPN11P43588 PDP3YLR455W 915 nt3.22□□□□□ -1.89
RPN11P43588 PET123YOR158W 957 nt3.22□□□□□ -1.89
Retrieved 100 of 7,029 protein–RNA pairs in 76.7 ms