Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC32■■■□□ 2.71
COL17A1Q9UMD9 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC32■■■□□ 2.71
COL17A1Q9UMD9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
COL17A1Q9UMD9 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC32■■■□□ 2.71
COL17A1Q9UMD9 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC32■■■□□ 2.71
COL17A1Q9UMD9 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC32■■■□□ 2.71
COL17A1Q9UMD9 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 AC005521.1-201ENST00000393351 872 ntBASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 MCRIP2P1-201ENST00000394346 511 ntBASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 GRAP-204ENST00000573099 846 ntTSL 3 BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 CRK-204ENST00000574295 1391 ntTSL 5 BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 PREB-202ENST00000406567 1910 ntTSL 5 BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC31.99■■■□□ 2.71
COL17A1Q9UMD9 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL17A1Q9UMD9 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL17A1Q9UMD9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL17A1Q9UMD9 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC31.98■■■□□ 2.71
COL17A1Q9UMD9 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL17A1Q9UMD9 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL17A1Q9UMD9 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL17A1Q9UMD9 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL17A1Q9UMD9 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL17A1Q9UMD9 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL17A1Q9UMD9 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 AC110285.5-201ENST00000611501 352 ntBASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 GCK-205ENST00000437084 1385 ntTSL 5 BASIC31.97■■■□□ 2.71
COL17A1Q9UMD9 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
COL17A1Q9UMD9 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
COL17A1Q9UMD9 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC31.96■■■□□ 2.71
COL17A1Q9UMD9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
COL17A1Q9UMD9 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC31.96■■■□□ 2.71
COL17A1Q9UMD9 MMP23A-201ENST00000234610 1017 ntBASIC31.96■■■□□ 2.71
COL17A1Q9UMD9 AC026471.5-201ENST00000615068 467 ntBASIC31.96■■■□□ 2.71
COL17A1Q9UMD9 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
COL17A1Q9UMD9 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC31.95■■■□□ 2.7
COL17A1Q9UMD9 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC31.95■■■□□ 2.7
COL17A1Q9UMD9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC31.95■■■□□ 2.7
COL17A1Q9UMD9 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
COL17A1Q9UMD9 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC31.94■■■□□ 2.7
COL17A1Q9UMD9 KRT8P9-201ENST00000558927 1449 ntBASIC31.94■■■□□ 2.7
COL17A1Q9UMD9 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
COL17A1Q9UMD9 LINC01960-201ENST00000563759 1884 ntBASIC31.94■■■□□ 2.7
COL17A1Q9UMD9 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC31.94■■■□□ 2.7
COL17A1Q9UMD9 AP003071.4-201ENST00000562276 1284 ntBASIC31.94■■■□□ 2.7
COL17A1Q9UMD9 AL121894.2-201ENST00000602977 491 ntBASIC31.94■■■□□ 2.7
COL17A1Q9UMD9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC31.94■■■□□ 2.7
COL17A1Q9UMD9 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
COL17A1Q9UMD9 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
COL17A1Q9UMD9 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC31.93■■■□□ 2.7
COL17A1Q9UMD9 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC31.93■■■□□ 2.7
COL17A1Q9UMD9 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
COL17A1Q9UMD9 KRASP1-201ENST00000407852 552 ntBASIC31.93■■■□□ 2.7
COL17A1Q9UMD9 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC31.93■■■□□ 2.7
COL17A1Q9UMD9 THEM4-205ENST00000489410 643 ntTSL 2 BASIC31.93■■■□□ 2.7
COL17A1Q9UMD9 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
COL17A1Q9UMD9 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC31.93■■■□□ 2.7
COL17A1Q9UMD9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC31.93■■■□□ 2.7
COL17A1Q9UMD9 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
COL17A1Q9UMD9 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC31.93■■■□□ 2.7
COL17A1Q9UMD9 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
COL17A1Q9UMD9 KRT18P57-201ENST00000443599 1254 ntBASIC31.92■■■□□ 2.7
COL17A1Q9UMD9 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
COL17A1Q9UMD9 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC31.92■■■□□ 2.7
COL17A1Q9UMD9 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL17A1Q9UMD9 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL17A1Q9UMD9 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
COL17A1Q9UMD9 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL17A1Q9UMD9 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC31.91■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms