Protein–RNA interactions for Protein: P07988

SFTPB, Pulmonary surfactant-associated protein B, humanhuman

Predictions only

Length 381 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFTPBP07988 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SFTPBP07988 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SFTPBP07988 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SFTPBP07988 AC026271.2-201ENST00000428091 497 ntBASIC18.07■□□□□ 0.48
SFTPBP07988 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.07■□□□□ 0.48
SFTPBP07988 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.07■□□□□ 0.48
SFTPBP07988 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SFTPBP07988 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SFTPBP07988 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SFTPBP07988 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SFTPBP07988 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SFTPBP07988 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.07■□□□□ 0.48
SFTPBP07988 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SFTPBP07988 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SFTPBP07988 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SFTPBP07988 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SFTPBP07988 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.06■□□□□ 0.48
SFTPBP07988 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.06■□□□□ 0.48
SFTPBP07988 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SFTPBP07988 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.06■□□□□ 0.48
SFTPBP07988 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SFTPBP07988 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.06■□□□□ 0.48
SFTPBP07988 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.06■□□□□ 0.48
SFTPBP07988 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SFTPBP07988 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SFTPBP07988 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SFTPBP07988 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.06■□□□□ 0.48
SFTPBP07988 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.06■□□□□ 0.48
SFTPBP07988 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
SFTPBP07988 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
SFTPBP07988 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.06■□□□□ 0.48
SFTPBP07988 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.06■□□□□ 0.48
SFTPBP07988 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.06■□□□□ 0.48
SFTPBP07988 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SFTPBP07988 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SFTPBP07988 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.06■□□□□ 0.48
SFTPBP07988 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SFTPBP07988 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SFTPBP07988 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SFTPBP07988 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SFTPBP07988 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SFTPBP07988 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
SFTPBP07988 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.05■□□□□ 0.48
SFTPBP07988 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
SFTPBP07988 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SFTPBP07988 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SFTPBP07988 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SFTPBP07988 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.05■□□□□ 0.48
SFTPBP07988 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SFTPBP07988 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.05■□□□□ 0.48
SFTPBP07988 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SFTPBP07988 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SFTPBP07988 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.05■□□□□ 0.48
SFTPBP07988 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SFTPBP07988 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
SFTPBP07988 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SFTPBP07988 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.05■□□□□ 0.48
SFTPBP07988 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SFTPBP07988 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SFTPBP07988 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SFTPBP07988 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SFTPBP07988 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.04■□□□□ 0.48
SFTPBP07988 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SFTPBP07988 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SFTPBP07988 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SFTPBP07988 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.04■□□□□ 0.48
SFTPBP07988 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SFTPBP07988 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SFTPBP07988 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.04■□□□□ 0.48
SFTPBP07988 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
SFTPBP07988 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.04■□□□□ 0.48
SFTPBP07988 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SFTPBP07988 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SFTPBP07988 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.04■□□□□ 0.48
SFTPBP07988 SMUG1P1-201ENST00000590640 811 ntBASIC18.04■□□□□ 0.48
SFTPBP07988 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.04■□□□□ 0.48
SFTPBP07988 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.04■□□□□ 0.48
SFTPBP07988 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SFTPBP07988 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SFTPBP07988 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SFTPBP07988 AP006587.3-201ENST00000525742 1516 ntBASIC18.03■□□□□ 0.48
SFTPBP07988 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SFTPBP07988 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SFTPBP07988 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SFTPBP07988 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SFTPBP07988 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.03■□□□□ 0.48
SFTPBP07988 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SFTPBP07988 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SFTPBP07988 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SFTPBP07988 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.03■□□□□ 0.48
SFTPBP07988 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.03■□□□□ 0.48
SFTPBP07988 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SFTPBP07988 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.03■□□□□ 0.48
SFTPBP07988 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SFTPBP07988 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SFTPBP07988 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SFTPBP07988 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SFTPBP07988 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SFTPBP07988 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SFTPBP07988 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 160 ms