Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC15.43■□□□□ 0.06
UBR4Q5T4S7 LINC01971-201ENST00000617888 1048 ntBASIC15.42■□□□□ 0.06
UBR4Q5T4S7 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
UBR4Q5T4S7 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
UBR4Q5T4S7 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC15.41■□□□□ 0.06
UBR4Q5T4S7 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
UBR4Q5T4S7 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
UBR4Q5T4S7 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
UBR4Q5T4S7 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
UBR4Q5T4S7 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
UBR4Q5T4S7 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC15.38■□□□□ 0.05
UBR4Q5T4S7 GFER-205ENST00000569451 517 ntTSL 5 BASIC15.38■□□□□ 0.05
UBR4Q5T4S7 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
UBR4Q5T4S7 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
UBR4Q5T4S7 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC15.38■□□□□ 0.05
UBR4Q5T4S7 GPX1-201ENST00000419349 1106 ntBASIC15.37■□□□□ 0.05
UBR4Q5T4S7 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
UBR4Q5T4S7 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC15.36■□□□□ 0.05
UBR4Q5T4S7 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
UBR4Q5T4S7 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC15.36■□□□□ 0.05
UBR4Q5T4S7 CIB2-204ENST00000557846 934 ntTSL 3 BASIC15.36■□□□□ 0.05
UBR4Q5T4S7 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
UBR4Q5T4S7 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC15.35■□□□□ 0.05
UBR4Q5T4S7 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
UBR4Q5T4S7 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
UBR4Q5T4S7 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
UBR4Q5T4S7 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBR4Q5T4S7 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBR4Q5T4S7 AL451085.2-201ENST00000605085 799 ntBASIC15.34■□□□□ 0.05
UBR4Q5T4S7 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBR4Q5T4S7 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
UBR4Q5T4S7 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC15.33■□□□□ 0.04
UBR4Q5T4S7 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
UBR4Q5T4S7 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC15.32■□□□□ 0.04
UBR4Q5T4S7 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC15.32■□□□□ 0.04
UBR4Q5T4S7 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC15.32■□□□□ 0.04
UBR4Q5T4S7 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
UBR4Q5T4S7 DUX4L13-201ENST00000554103 1267 ntBASIC15.31■□□□□ 0.04
UBR4Q5T4S7 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC15.31■□□□□ 0.04
UBR4Q5T4S7 DUX4L15-201ENST00000611059 1267 ntBASIC15.31■□□□□ 0.04
UBR4Q5T4S7 DUX4L23-201ENST00000615195 1269 ntBASIC15.31■□□□□ 0.04
UBR4Q5T4S7 DUX4L24-201ENST00000617576 1269 ntBASIC15.31■□□□□ 0.04
UBR4Q5T4S7 DUX4L22-201ENST00000618238 1269 ntBASIC15.31■□□□□ 0.04
UBR4Q5T4S7 DUX4L20-201ENST00000619712 1269 ntBASIC15.31■□□□□ 0.04
UBR4Q5T4S7 DUX4L21-201ENST00000622058 1269 ntBASIC15.31■□□□□ 0.04
UBR4Q5T4S7 DUX4L10-201ENST00000622460 1267 ntBASIC15.31■□□□□ 0.04
UBR4Q5T4S7 DUX4L25-201ENST00000624915 1269 ntBASIC15.31■□□□□ 0.04
UBR4Q5T4S7 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
UBR4Q5T4S7 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
UBR4Q5T4S7 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
UBR4Q5T4S7 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
UBR4Q5T4S7 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UBR4Q5T4S7 TRIR-205ENST00000592273 783 ntTSL 3 BASIC15.29■□□□□ 0.04
UBR4Q5T4S7 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC15.28■□□□□ 0.04
UBR4Q5T4S7 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC15.28■□□□□ 0.04
UBR4Q5T4S7 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBR4Q5T4S7 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC15.27■□□□□ 0.04
UBR4Q5T4S7 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
UBR4Q5T4S7 RPS2-209ENST00000529806 993 ntTSL 3 BASIC15.27■□□□□ 0.03
UBR4Q5T4S7 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC15.27■□□□□ 0.03
UBR4Q5T4S7 AC092666.2-201ENST00000613287 246 ntBASIC15.26■□□□□ 0.03
UBR4Q5T4S7 MIR6090-201ENST00000622481 60 ntBASIC15.26■□□□□ 0.03
UBR4Q5T4S7 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
UBR4Q5T4S7 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
UBR4Q5T4S7 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC15.25■□□□□ 0.03
UBR4Q5T4S7 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
UBR4Q5T4S7 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
UBR4Q5T4S7 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
UBR4Q5T4S7 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
UBR4Q5T4S7 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
UBR4Q5T4S7 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
UBR4Q5T4S7 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
UBR4Q5T4S7 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
UBR4Q5T4S7 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
UBR4Q5T4S7 HES6-205ENST00000409356 528 ntTSL 2 BASIC15.24■□□□□ 0.03
UBR4Q5T4S7 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
UBR4Q5T4S7 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
UBR4Q5T4S7 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
UBR4Q5T4S7 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
UBR4Q5T4S7 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
UBR4Q5T4S7 TSPY13P-201ENST00000338964 914 ntBASIC15.23■□□□□ 0.03
UBR4Q5T4S7 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
UBR4Q5T4S7 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
UBR4Q5T4S7 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
UBR4Q5T4S7 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
UBR4Q5T4S7 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
UBR4Q5T4S7 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
UBR4Q5T4S7 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC15.2■□□□□ 0.02
UBR4Q5T4S7 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UBR4Q5T4S7 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC15.2■□□□□ 0.02
UBR4Q5T4S7 AC004987.1-201ENST00000428627 508 ntBASIC15.2■□□□□ 0.02
UBR4Q5T4S7 CEP120-209ENST00000515110 606 ntTSL 3 BASIC15.2■□□□□ 0.02
UBR4Q5T4S7 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC15.2■□□□□ 0.02
UBR4Q5T4S7 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC15.2■□□□□ 0.02
UBR4Q5T4S7 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC15.19■□□□□ 0.02
UBR4Q5T4S7 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBR4Q5T4S7 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
UBR4Q5T4S7 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBR4Q5T4S7 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC15.19■□□□□ 0.02
UBR4Q5T4S7 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms