Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 RDN25-2RDN25-2 3396 nt10.07□□□□□ -0.8
UBP3Q01477 SMM1YNR015W 1155 nt10.07□□□□□ -0.8
UBP3Q01477 GND1YHR183W 1470 nt10.06□□□□□ -0.8
UBP3Q01477 MEP3YPR138C 1470 nt10.06□□□□□ -0.8
UBP3Q01477 GND2YGR256W 1479 nt10.05□□□□□ -0.8
UBP3Q01477 LOT5YKL183W 921 nt10.03□□□□□ -0.8
UBP3Q01477 URA6YKL024C 615 nt10.02□□□□□ -0.81 RIP-Chip
UBP3Q01477 APT2YDR441C 546 nt10.01□□□□□ -0.81
UBP3Q01477 TRT2tT(CGU)K 72 nt10□□□□□ -0.81
UBP3Q01477 PRY1YJL079C 900 nt9.99□□□□□ -0.81 RIP-Chip
UBP3Q01477 SFP1YLR403W 2052 nt9.98□□□□□ -0.81 RIP-Chip
UBP3Q01477 OYE3YPL171C 1203 nt9.98□□□□□ -0.81
UBP3Q01477 PUS7YOR243C 2031 nt9.98□□□□□ -0.81
UBP3Q01477 CSM1YCR086W 573 nt9.96□□□□□ -0.82
UBP3Q01477 RPC82YPR190C 1965 nt9.95□□□□□ -0.82
UBP3Q01477 YNR029CYNR029C 1290 nt9.94□□□□□ -0.82
UBP3Q01477 ADH1YOL086C 1047 nt9.93□□□□□ -0.82
UBP3Q01477 BNI5YNL166C 1347 nt9.92□□□□□ -0.82
UBP3Q01477 PET8YNL003C 855 nt9.92□□□□□ -0.82
UBP3Q01477 YPI1YFR003C 468 nt9.91□□□□□ -0.82
UBP3Q01477 FLR1YBR008C 1647 nt9.91□□□□□ -0.82
UBP3Q01477 NPP1YCR026C 2229 nt9.91□□□□□ -0.82 RIP-Chip
UBP3Q01477 INA1YLR413W 2028 nt9.9□□□□□ -0.82 RIP-Chip
UBP3Q01477 RIB2YOL066C 1776 nt9.89□□□□□ -0.83
UBP3Q01477 YJL055WYJL055W 738 nt9.89□□□□□ -0.83
UBP3Q01477 LSB3YFR024C-A 1380 nt9.88□□□□□ -0.83
UBP3Q01477 HXT12YIL170W 1374 nt9.88□□□□□ -0.83
UBP3Q01477 MSC1YML128C 1542 nt9.88□□□□□ -0.83
UBP3Q01477 FMS1YMR020W 1527 nt9.88□□□□□ -0.83 RIP-Chip
UBP3Q01477 PHO23YNL097C 993 nt9.88□□□□□ -0.83
UBP3Q01477 SEC61YLR378C 1443 nt9.88□□□□□ -0.83 RIP-Chip
UBP3Q01477 OXA1YER154W 1209 nt9.87□□□□□ -0.83
UBP3Q01477 SAM3YPL274W 1764 nt9.86□□□□□ -0.83
UBP3Q01477 GID7YCL039W 2238 nt9.86□□□□□ -0.83
UBP3Q01477 DLD2YDL178W 1593 nt9.86□□□□□ -0.83
UBP3Q01477 FUB1YCR076C 753 nt9.85□□□□□ -0.83
UBP3Q01477 SAM2YDR502C 1155 nt9.85□□□□□ -0.83
UBP3Q01477 VRG4YGL225W 1014 nt9.85□□□□□ -0.83 RIP-Chip
UBP3Q01477 NAS6YGR232W 687 nt9.85□□□□□ -0.83
UBP3Q01477 YPS3YLR121C 1527 nt9.84□□□□□ -0.83
UBP3Q01477 ACH1YBL015W 1581 nt9.84□□□□□ -0.83
UBP3Q01477 HEM14YER014W 1620 nt9.82□□□□□ -0.84
UBP3Q01477 RIM8YGL045W 1629 nt9.82□□□□□ -0.84
UBP3Q01477 YJL195CYJL195C 702 nt9.82□□□□□ -0.84
UBP3Q01477 RSC8YFR037C 1674 nt9.82□□□□□ -0.84 RIP-Chip
UBP3Q01477 SPT20YOL148C 1815 nt9.82□□□□□ -0.84 RIP-Chip
UBP3Q01477 HEM13YDR044W 987 nt9.81□□□□□ -0.84
UBP3Q01477 CWC15YDR163W 528 nt9.81□□□□□ -0.84
UBP3Q01477 SPP2YOR148C 558 nt9.81□□□□□ -0.84
UBP3Q01477 MAE1YKL029C 2010 nt9.81□□□□□ -0.84
UBP3Q01477 YER188WYER188W 720 nt9.79□□□□□ -0.84
UBP3Q01477 YJL118WYJL118W 660 nt9.79□□□□□ -0.84
UBP3Q01477 YOR325WYOR325W 474 nt9.79□□□□□ -0.84
UBP3Q01477 PAU21YOR394W 495 nt9.78□□□□□ -0.84
UBP3Q01477 PAU22YPL282C 495 nt9.78□□□□□ -0.84
UBP3Q01477 LSB5YCL034W 1065 nt9.78□□□□□ -0.84
UBP3Q01477 FUN14YAL008W 597 nt9.77□□□□□ -0.85
UBP3Q01477 RPT5YOR117W 1305 nt9.77□□□□□ -0.85
UBP3Q01477 NUC1YJL208C 990 nt9.76□□□□□ -0.85
UBP3Q01477 ESBP6YNL125C 2022 nt9.76□□□□□ -0.85 RIP-Chip
UBP3Q01477 GAL3YDR009W 1563 nt9.75□□□□□ -0.85
UBP3Q01477 RAS2YNL098C 969 nt9.75□□□□□ -0.85
UBP3Q01477 YIL100C-AYIL100C-A 339 nt9.74□□□□□ -0.85
UBP3Q01477 EAF3YPR023C 1206 nt9.72□□□□□ -0.85
UBP3Q01477 TAT2YOL020W 1779 nt9.72□□□□□ -0.85
UBP3Q01477 TPS1YBR126C 1488 nt9.72□□□□□ -0.85
UBP3Q01477 ILV3YJR016C 1758 nt9.7□□□□□ -0.86 RIP-Chip
UBP3Q01477 RAD51YER095W 1203 nt9.7□□□□□ -0.86
UBP3Q01477 OSH7YHR001W 1314 nt9.69□□□□□ -0.86
UBP3Q01477 TPO4YOR273C 1980 nt9.69□□□□□ -0.86
UBP3Q01477 ARO7YPR060C 771 nt9.69□□□□□ -0.86
UBP3Q01477 OYE2YHR179W 1203 nt9.68□□□□□ -0.86 RIP-Chip
UBP3Q01477 SOL2YCR073W-A 948 nt9.67□□□□□ -0.86
UBP3Q01477 VPS62YGR141W 1404 nt9.66□□□□□ -0.86 RIP-Chip
UBP3Q01477 HMG2YLR450W 3138 nt9.66□□□□□ -0.86
UBP3Q01477 YDR455CYDR455C 309 nt9.66□□□□□ -0.86
UBP3Q01477 YEL008WYEL008W 381 nt9.66□□□□□ -0.86
UBP3Q01477 YLR349WYLR349W 507 nt9.66□□□□□ -0.86
UBP3Q01477 STE4YOR212W 1272 nt9.66□□□□□ -0.86 RIP-Chip
UBP3Q01477 CCT2YIL142W 1584 nt9.66□□□□□ -0.86
UBP3Q01477 YGL114WYGL114W 2178 nt9.65□□□□□ -0.86
UBP3Q01477 SNZ1YMR096W 894 nt9.64□□□□□ -0.87 RIP-Chip
UBP3Q01477 YNL024CYNL024C 741 nt9.64□□□□□ -0.87
UBP3Q01477 OPI10YOL032W 741 nt9.64□□□□□ -0.87
UBP3Q01477 LSB6YJL100W 1824 nt9.63□□□□□ -0.87
UBP3Q01477 MUP1YGR055W 1725 nt9.63□□□□□ -0.87
UBP3Q01477 YPL041CYPL041C 624 nt9.63□□□□□ -0.87
UBP3Q01477 RIB7YBR153W 735 nt9.63□□□□□ -0.87
UBP3Q01477 CCT5YJR064W 1689 nt9.62□□□□□ -0.87
UBP3Q01477 HOL1YNR055C 1761 nt9.62□□□□□ -0.87 RIP-Chip
UBP3Q01477 DDI1YER143W 1287 nt9.61□□□□□ -0.87
UBP3Q01477 TMA23YMR269W 636 nt9.61□□□□□ -0.87
UBP3Q01477 YDL086WYDL086W 822 nt9.6□□□□□ -0.87
UBP3Q01477 LSM5YER146W 282 nt9.59□□□□□ -0.87
UBP3Q01477 DTR1YBR180W 1719 nt9.59□□□□□ -0.87
UBP3Q01477 GPN2YOR262W 1044 nt9.58□□□□□ -0.88 RIP-Chip
UBP3Q01477 GNP1YDR508C 1992 nt9.57□□□□□ -0.88 RIP-Chip
UBP3Q01477 ARO8YGL202W 1503 nt9.57□□□□□ -0.88
UBP3Q01477 ACO2YJL200C 2370 nt9.56□□□□□ -0.88
UBP3Q01477 BET2YPR176C 978 nt9.55□□□□□ -0.88
Retrieved 100 of 7,029 protein–RNA pairs in 16.6 ms