Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TST-203ENST00000438203 451 ntTSL 322.84■■□□□ 1.259e-9■■■■■ 30.8
YBX3P16989 MAGED1-209ENST00000485420 2906 ntTSL 514.08□□□□□ -0.165e-9■■■■■ 30.8
YBX3P16989 MAGED1-202ENST00000375695 2875 ntTSL 1 (best) BASIC13.53□□□□□ -0.245e-9■■■■■ 30.8
YBX3P16989 MAGED1-201ENST00000326587 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.295e-9■■■■■ 30.8
YBX3P16989 MAGED1-203ENST00000375722 2806 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.385e-9■■■■■ 30.8
YBX3P16989 MAGED1-207ENST00000482188 680 ntTSL 311.98□□□□□ -0.495e-9■■■■■ 30.8
YBX3P16989 MAGED1-204ENST00000375772 2701 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.685e-9■■■■■ 30.8
YBX3P16989 MAGED1-210ENST00000494718 5418 ntTSL 210.5□□□□□ -0.735e-9■■■■■ 30.8
YBX3P16989 MAGED1-205ENST00000470461 810 ntTSL 27.45□□□□□ -1.225e-9■■■■■ 30.8
YBX3P16989 AKIP1-209ENST00000530281 469 ntTSL 323.48■■□□□ 1.351e-7■■■■■ 30.8
YBX3P16989 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.921e-7■■■■■ 30.8
YBX3P16989 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.861e-7■■■■■ 30.8
YBX3P16989 AKIP1-208ENST00000529942 513 ntTSL 216.55■□□□□ 0.241e-7■■■■■ 30.8
YBX3P16989 TNFAIP8-206ENST00000504771 8681 ntTSL 1 (best) BASIC9.42□□□□□ -0.95e-10■■■■■ 30.8
YBX3P16989 TNFAIP8-204ENST00000503646 2502 ntTSL 2 BASIC8.1□□□□□ -1.115e-10■■■■■ 30.8
YBX3P16989 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.35□□□□□ -1.555e-10■■■■■ 30.8
YBX3P16989 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.531e-6■■■■■ 30.8
YBX3P16989 CAPN2-209ENST00000487223 2991 ntTSL 28.34□□□□□ -1.076e-8■■■■■ 30.8
YBX3P16989 CAPN2-206ENST00000474026 4130 ntTSL 24.9□□□□□ -1.636e-8■■■■■ 30.8
YBX3P16989 CAPN2-204ENST00000463997 2547 ntTSL 24.89□□□□□ -1.636e-8■■■■■ 30.8
YBX3P16989 AMD1-208ENST00000619590 4329 ntTSL 26.91□□□□□ -1.33e-9■■■■■ 30.8
YBX3P16989 MLF1-211ENST00000487838 473 ntTSL 28.14□□□□□ -1.119e-28■■■■■ 30.7
YBX3P16989 MLF1-204ENST00000466246 653 ntTSL 27.94□□□□□ -1.149e-28■■■■■ 30.7
YBX3P16989 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC6.47□□□□□ -1.379e-28■■■■■ 30.7
YBX3P16989 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.494e-14■■■■■ 30.7
YBX3P16989 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC25.83■■□□□ 1.732e-7■■■■■ 30.7
YBX3P16989 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC23.79■■□□□ 1.42e-7■■■■■ 30.7
YBX3P16989 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC20.13■□□□□ 0.812e-7■■■■■ 30.7
YBX3P16989 AKIP1-205ENST00000524577 569 ntTSL 420.13■□□□□ 0.812e-7■■■■■ 30.7
YBX3P16989 RPL13AP5-201ENST00000439189 612 ntBASIC16.75■□□□□ 0.272e-9■■■■■ 30.6
YBX3P16989 DSCR3-212ENST00000497493 5648 ntTSL 210.77□□□□□ -0.695e-7■■■■■ 30.5
YBX3P16989 MACROD1-206ENST00000542359 459 ntTSL 321.2■□□□□ 0.984e-7■■■■■ 30.5
YBX3P16989 RPL4P4-201ENST00000422486 1284 ntBASIC11.84□□□□□ -0.513e-7■■■■■ 30.4
YBX3P16989 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC13.29□□□□□ -0.282e-8■■■■■ 30.4
YBX3P16989 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.584e-13■■■■■ 30.3
YBX3P16989 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.033e-9■■■■■ 30.3
YBX3P16989 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.075e-6■■■■■ 30.3
YBX3P16989 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC8.14□□□□□ -1.115e-6■■■■■ 30.3
YBX3P16989 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.325e-6■■■■■ 30.3
YBX3P16989 E2F8-204ENST00000532666 719 ntTSL 1 (best)25.34■■□□□ 1.658e-10■■■■■ 30.3
YBX3P16989 E2F8-205ENST00000620009 3519 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.428e-10■■■■■ 30.3
YBX3P16989 E2F8-202ENST00000527884 3432 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.618e-10■■■■■ 30.3
YBX3P16989 FAR1-201ENST00000354817 5264 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.658e-10■■■■■ 30.3
YBX3P16989 ORC5-205ENST00000463152 528 ntTSL 38.18□□□□□ -1.18e-10■■■■■ 30.3
YBX3P16989 E2F8-201ENST00000250024 3240 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.148e-10■■■■■ 30.3
YBX3P16989 Y_RNA.446-201ENST00000384178 104 ntBASIC4.3□□□□□ -1.728e-19■■■■■ 30.3
YBX3P16989 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.66□□□□□ -1.988e-10■■■■■ 30.3
YBX3P16989 METTL26-210ENST00000565799 716 ntTSL 328.42■■■□□ 2.141e-8■■■■■ 30.2
YBX3P16989 NUP54-215ENST00000514313 537 ntTSL 29.89□□□□□ -0.834e-11■■■■■ 30.1
YBX3P16989 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.69■□□□□ 0.91e-6■■■■■ 30.1
YBX3P16989 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.15■□□□□ 0.821e-6■■■■■ 30.1
YBX3P16989 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.771e-6■■■■■ 30.1
YBX3P16989 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC19.09■□□□□ 0.651e-6■■■■■ 30.1
YBX3P16989 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC19.05■□□□□ 0.641e-6■■■■■ 30.1
YBX3P16989 WDR41-218ENST00000511630 516 ntTSL 36.51□□□□□ -1.376e-7■■■■■ 30
YBX3P16989 GTF3C2-210ENST00000480989 604 ntTSL 413.1□□□□□ -0.313e-7■■■■■ 30
YBX3P16989 GALM-205ENST00000444351 834 ntTSL 520.44■□□□□ 0.864e-7■■■■■ 30
YBX3P16989 GALM-202ENST00000410063 1023 ntTSL 3 BASIC15.65■□□□□ 0.14e-7■■■■■ 30
YBX3P16989 GALM-201ENST00000272252 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.634e-7■■■■■ 30
YBX3P16989 GALM-204ENST00000434934 724 ntTSL 35.24□□□□□ -1.574e-7■■■■■ 30
YBX3P16989 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.114e-8■■■■■ 29.9
YBX3P16989 CAPN2-202ENST00000433674 3264 ntTSL 2 BASIC10.94□□□□□ -0.664e-8■■■■■ 29.9
YBX3P16989 RBM17-210ENST00000476706 927 ntTSL 29.52□□□□□ -0.891e-9■■■■■ 29.8
YBX3P16989 RBM17-207ENST00000465906 914 ntTSL 27.99□□□□□ -1.131e-9■■■■■ 29.8
YBX3P16989 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC27.71■■■□□ 2.032e-8■■■■■ 29.8
YBX3P16989 XXYLT1-208ENST00000473200 698 ntTSL 227.71■■■□□ 2.032e-8■■■■■ 29.8
YBX3P16989 XXYLT1-210ENST00000491138 738 ntTSL 326.32■■□□□ 1.82e-8■■■■■ 29.8
YBX3P16989 XXYLT1-203ENST00000418940 582 ntTSL 426.24■■□□□ 1.792e-8■■■■■ 29.8
YBX3P16989 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC22.91■■□□□ 1.262e-8■■■■■ 29.8
YBX3P16989 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC21.11■□□□□ 0.972e-8■■■■■ 29.8
YBX3P16989 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.562e-8■■■■■ 29.8
YBX3P16989 DYNLL1-210ENST00000552316 670 nt7.06□□□□□ -1.282e-15■■■■■ 29.8
YBX3P16989 RNF41-205ENST00000548225 1001 ntTSL 519.79■□□□□ 0.763e-9■■■■■ 29.8
YBX3P16989 RNF41-210ENST00000552244 716 ntTSL 3 BASIC19.41■□□□□ 0.73e-9■■■■■ 29.8
YBX3P16989 RNF41-206ENST00000549038 890 ntTSL 312.32□□□□□ -0.443e-9■■■■■ 29.8
YBX3P16989 RNF41-207ENST00000549119 796 ntTSL 510.74□□□□□ -0.693e-9■■■■■ 29.8
YBX3P16989 RNF41-208ENST00000550379 525 ntTSL 39.25□□□□□ -0.933e-9■■■■■ 29.8
YBX3P16989 JOSD1-204ENST00000427389 571 ntTSL 433.13■■■□□ 2.891e-9■■■■■ 29.8
YBX3P16989 JOSD1-210ENST00000545590 647 ntTSL 39.33□□□□□ -0.921e-9■■■■■ 29.8
YBX3P16989 JOSD1-207ENST00000482442 467 ntTSL 28.3□□□□□ -1.081e-9■■■■■ 29.8
YBX3P16989 ALG3-204ENST00000423996 904 ntTSL 226.4■■□□□ 1.825e-10■■■■■ 29.7
YBX3P16989 ALG3-206ENST00000446569 967 ntTSL 523.27■■□□□ 1.325e-10■■■■■ 29.7
YBX3P16989 ALG3-203ENST00000414845 814 ntTSL 522.84■■□□□ 1.255e-10■■■■■ 29.7
YBX3P16989 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.155e-10■■■■■ 29.7
YBX3P16989 ALG3-202ENST00000411922 1452 ntTSL 1 (best)21.71■■□□□ 1.075e-10■■■■■ 29.7
YBX3P16989 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.32■□□□□ 0.365e-10■■■■■ 29.7
YBX3P16989 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC17.01■□□□□ 0.315e-10■■■■■ 29.7
YBX3P16989 STOML2-203ENST00000487490 360 ntTSL 27.16□□□□□ -1.263e-15■■■■■ 29.7
YBX3P16989 AZIN1-202ENST00000347770 2857 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.933e-11■■■■■ 29.7
YBX3P16989 CORO2A-202ENST00000375077 5459 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.691e-6■■■■■ 29.6
YBX3P16989 CORO2A-201ENST00000343933 5635 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.71e-6■■■■■ 29.6
YBX3P16989 ANXA2-238ENST00000561445 514 ntTSL 513.07□□□□□ -0.329e-17■■■■■ 29.6
YBX3P16989 ANXA2-206ENST00000557904 369 ntTSL 312.3□□□□□ -0.449e-17■■■■■ 29.6
YBX3P16989 ANXA2-208ENST00000557937 694 ntTSL 58.09□□□□□ -1.119e-17■■■■■ 29.6
YBX3P16989 MRPS27-203ENST00000506957 513 ntTSL 420.02■□□□□ 0.87e-9■■■■■ 29.6
YBX3P16989 MRPS27-212ENST00000522095 504 ntTSL 2 BASIC15.34■□□□□ 0.057e-9■■■■■ 29.6
YBX3P16989 MRPS27-216ENST00000523654 429 ntTSL 513.56□□□□□ -0.247e-9■■■■■ 29.6
YBX3P16989 MRPS27-210ENST00000520285 486 ntTSL 36.51□□□□□ -1.377e-9■■■■■ 29.6
YBX3P16989 CCDC43-204ENST00000588687 721 ntTSL 225.68■■□□□ 1.77e-9■■■■■ 29.6
YBX3P16989 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.827e-9■■■■■ 29.6
Retrieved 100 of 29,075 protein–RNA pairs in 613.7 ms