RNA–Protein interactions for RNA: ENST00000550379.1

RNF41-208, Transcript of ring finger protein 41, humanhuman

TSL 3

Gene RNF41, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41-208ENST00000550379 NISCHQ9Y2I1 1504 aa18.16■□□□□ 0.5
RNF41-208ENST00000550379 CCDC180Q9P1Z9 1646 aa16.03■□□□□ 0.16
RNF41-208ENST00000550379 ZCCHC6Q5VYS8 1495 aaKnown RBP15.21■□□□□ 0.03
RNF41-208ENST00000550379 DCAF1Q9Y4B6 1507 aa15.19■□□□□ 0.02
RNF41-208ENST00000550379 MYO15BQ96JP2 1530 aa15.17■□□□□ 0.02
RNF41-208ENST00000550379 ABCC9O60706 1549 aa15.12■□□□□ 0.01
RNF41-208ENST00000550379 NACADO15069 1562 aa15□□□□□ -0.01
RNF41-208ENST00000550379 RB1CC1Q8TDY2 1594 aa14.86□□□□□ -0.03
RNF41-208ENST00000550379 DCAF8L2P0C7V8 631 aa14.73□□□□□ -0.05
RNF41-208ENST00000550379 UNC13AQ9UPW8 1703 aa14.46□□□□□ -0.09
RNF41-208ENST00000550379 SHROOM4Q9ULL8 1493 aa14.46□□□□□ -0.09
RNF41-208ENST00000550379 SCRIBQ14160 1630 aa14.43□□□□□ -0.1
RNF41-208ENST00000550379 BICRAQ9NZM4 1560 aa14.39□□□□□ -0.11
RNF41-208ENST00000550379 PABPN1Q86U42 306 aaKnown RBP eCLIP14.15□□□□□ -0.14
RNF41-208ENST00000550379 BAZ1AQ9NRL2 1556 aaPredicted RBP14.05□□□□□ -0.16
RNF41-208ENST00000550379 CECR2Q9BXF3 1484 aa14.01□□□□□ -0.17
RNF41-208ENST00000550379 SMARCA4P51532 1647 aa13.97□□□□□ -0.17
RNF41-208ENST00000550379 PEG3Q9GZU2 1588 aa13.97□□□□□ -0.17
RNF41-208ENST00000550379 RSF1Q96T23 1441 aaPredicted RBP13.96□□□□□ -0.18
RNF41-208ENST00000550379 EIF4G1Q04637 1599 aaKnown RBP13.96□□□□□ -0.18
RNF41-208ENST00000550379 MROH2BQ7Z745 1585 aa13.93□□□□□ -0.18
RNF41-208ENST00000550379 SMARCA2P51531 1590 aa13.87□□□□□ -0.19
RNF41-208ENST00000550379 NCAPD3P42695 1498 aa13.86□□□□□ -0.19
RNF41-208ENST00000550379 ATAD2BQ9ULI0 1458 aa13.84□□□□□ -0.19
RNF41-208ENST00000550379 HMGXB3Q12766 1538 aa13.8□□□□□ -0.2
RNF41-208ENST00000550379 CC2D2AQ9P2K1 1620 aa13.78□□□□□ -0.2
RNF41-208ENST00000550379 WIZO95785 1651 aa13.75□□□□□ -0.21
RNF41-208ENST00000550379 TOP2AP11388 1531 aaKnown RBP13.72□□□□□ -0.21
RNF41-208ENST00000550379 BAZ1BQ9UIG0 1483 aaKnown RBP13.69□□□□□ -0.22
RNF41-208ENST00000550379 SUPT5HO00267 1087 aaKnown RBP13.64□□□□□ -0.23
RNF41-208ENST00000550379 DNAJC5BQ9UF47 199 aa13.6□□□□□ -0.23
RNF41-208ENST00000550379 CCDC88BA6NC98 1476 aa13.53□□□□□ -0.24
RNF41-208ENST00000550379 CFTRP13569 1480 aa13.43□□□□□ -0.26
RNF41-208ENST00000550379 CADPSQ9ULU8 1353 aa13.41□□□□□ -0.26
RNF41-208ENST00000550379 LAMC3Q9Y6N6 1575 aa13.39□□□□□ -0.27
RNF41-208ENST00000550379 PRDM2Q13029 1718 aa13.32□□□□□ -0.28
RNF41-208ENST00000550379 PDS5BQ9NTI5 1447 aa13.26□□□□□ -0.29
RNF41-208ENST00000550379 NESP48681 1621 aa13.21□□□□□ -0.3
RNF41-208ENST00000550379 FANCD2Q9BXW9 1451 aa13.19□□□□□ -0.3
RNF41-208ENST00000550379 ABCC8Q09428 1581 aa13.18□□□□□ -0.3
RNF41-208ENST00000550379 CEP164Q9UPV0 1460 aa13.15□□□□□ -0.3
RNF41-208ENST00000550379 WRNQ14191 1432 aaPredicted RBP eCLIP13.12□□□□□ -0.31
RNF41-208ENST00000550379 CHIC1Q5VXU3 224 aa13.1□□□□□ -0.31
RNF41-208ENST00000550379 TOP2BQ02880 1626 aa13.09□□□□□ -0.31
RNF41-208ENST00000550379 BIVM-ERCC5R4GMW8 1640 aa13.08□□□□□ -0.32
RNF41-208ENST00000550379 KIF21AQ7Z4S6 1674 aa13.08□□□□□ -0.32
RNF41-208ENST00000550379 MRC2Q9UBG0 1479 aa13.07□□□□□ -0.32
RNF41-208ENST00000550379 DNMBPQ6XZF7 1577 aa13.07□□□□□ -0.32
RNF41-208ENST00000550379 WDR62O43379 1518 aa13.05□□□□□ -0.32
RNF41-208ENST00000550379 CUX1P39880 1505 aa13.05□□□□□ -0.32
RNF41-208ENST00000550379 URB2Q14146 1524 aaKnown RBP13.03□□□□□ -0.32
RNF41-208ENST00000550379 TOPBP1Q92547 1522 aa13.03□□□□□ -0.32
RNF41-208ENST00000550379 ERCC6Q03468 1493 aa13.02□□□□□ -0.33
RNF41-208ENST00000550379 THOC2Q8NI27 1593 aaKnown RBP13.02□□□□□ -0.33
RNF41-208ENST00000550379 SYNJ1O43426 1573 aa13.01□□□□□ -0.33
RNF41-208ENST00000550379 TRIM41Q8WV44 630 aa12.98□□□□□ -0.33
RNF41-208ENST00000550379 POLA1P09884 1462 aaPredicted RBP12.95□□□□□ -0.34
RNF41-208ENST00000550379 FGD5Q6ZNL6 1462 aa12.93□□□□□ -0.34
RNF41-208ENST00000550379 WDR97A6NE52 1622 aa12.93□□□□□ -0.34
RNF41-208ENST00000550379 CUX2O14529 1486 aa12.92□□□□□ -0.34
RNF41-208ENST00000550379 EEA1Q15075 1411 aa12.92□□□□□ -0.34
RNF41-208ENST00000550379 ABCA10Q8WWZ4 1543 aa12.92□□□□□ -0.34
RNF41-208ENST00000550379 IFT140Q96RY7 1462 aa12.91□□□□□ -0.34
RNF41-208ENST00000550379 SOGA1O94964 1423 aa12.89□□□□□ -0.35
RNF41-208ENST00000550379 TARBP1Q13395 1621 aaKnown RBP12.89□□□□□ -0.35
RNF41-208ENST00000550379 KIF27Q86VH2 1401 aa12.84□□□□□ -0.35
RNF41-208ENST00000550379 RAD54L2Q9Y4B4 1467 aa12.8□□□□□ -0.36
RNF41-208ENST00000550379 ABCA5Q8WWZ7 1642 aa12.8□□□□□ -0.36
RNF41-208ENST00000550379 ERICH3Q5RHP9 1530 aa12.78□□□□□ -0.36
RNF41-208ENST00000550379 IGF1RP08069 1367 aa12.76□□□□□ -0.37
RNF41-208ENST00000550379 GAPVD1Q14C86 1478 aa12.76□□□□□ -0.37
RNF41-208ENST00000550379 CSRNP3Q8WYN3 585 aa12.74□□□□□ -0.37
RNF41-208ENST00000550379 GRIN2BQ13224 1484 aa12.73□□□□□ -0.37
RNF41-208ENST00000550379 PRXQ9BXM0 1461 aa12.73□□□□□ -0.37
RNF41-208ENST00000550379 RUSC2Q8N2Y8 1516 aa12.72□□□□□ -0.37
RNF41-208ENST00000550379 TDRD9Q8NDG6 1382 aaKnown RBP12.71□□□□□ -0.37
RNF41-208ENST00000550379 ZNF608Q9ULD9 1512 aaPredicted RBP12.71□□□□□ -0.38
RNF41-208ENST00000550379 MAGI1Q96QZ7 1491 aaPredicted RBP12.7□□□□□ -0.38
RNF41-208ENST00000550379 CUL7Q14999 1698 aa12.7□□□□□ -0.38
RNF41-208ENST00000550379 EIF4G3O43432 1585 aaKnown RBP12.69□□□□□ -0.38
RNF41-208ENST00000550379 KIF21BO75037 1637 aa12.69□□□□□ -0.38
RNF41-208ENST00000550379 AQRO60306 1485 aaKnown RBP eCLIP12.68□□□□□ -0.38
RNF41-208ENST00000550379 FHAD1B1AJZ9 1412 aa12.66□□□□□ -0.38
RNF41-208ENST00000550379 CARMIL1Q5VZK9 1371 aa12.66□□□□□ -0.38
RNF41-208ENST00000550379 PBRM1Q86U86 1689 aa12.65□□□□□ -0.38
RNF41-208ENST00000550379 RAPGEF2Q9Y4G8 1499 aa12.63□□□□□ -0.39
RNF41-208ENST00000550379 ADAMTS12P58397 1594 aa12.61□□□□□ -0.39
RNF41-208ENST00000550379 SYNJ2O15056 1496 aa12.61□□□□□ -0.39
RNF41-208ENST00000550379 GOLGA3Q08378 1498 aa12.59□□□□□ -0.39
RNF41-208ENST00000550379 SNAPC4Q5SXM2 1469 aa12.58□□□□□ -0.4
RNF41-208ENST00000550379 TNIKQ9UKE5 1360 aa12.56□□□□□ -0.4
RNF41-208ENST00000550379 GRIN2AQ12879 1464 aa12.55□□□□□ -0.4
RNF41-208ENST00000550379 NUP160Q12769 1436 aa12.54□□□□□ -0.4
RNF41-208ENST00000550379 FAM9AQ8IZU1 332 aaPredicted RBP12.52□□□□□ -0.41
RNF41-208ENST00000550379 KIAA0586Q9BVV6 1533 aa12.51□□□□□ -0.41
RNF41-208ENST00000550379 CHMP7Q8WUX9 453 aaPredicted RBP12.49□□□□□ -0.41
RNF41-208ENST00000550379 CTTNBP2Q8WZ74 1663 aa12.45□□□□□ -0.42
RNF41-208ENST00000550379 CEP170Q5SW79 1584 aa12.43□□□□□ -0.42
RNF41-208ENST00000550379 UGGT2Q9NYU1 1516 aa12.43□□□□□ -0.42
RNF41-208ENST00000550379 CHD1O14646 1710 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms