Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 AC026271.2-201ENST00000428091 497 ntBASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 EFS-203ENST00000429593 2610 ntTSL 2 BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
BLOC1S4Q9NUP1 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 AP004607.4-201ENST00000530158 1459 ntBASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 SERP1-208ENST00000491660 830 ntTSL 2 BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 AC087623.3-201ENST00000607047 1098 ntBASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.52■■□□□ 1.36
BLOC1S4Q9NUP1 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.35
BLOC1S4Q9NUP1 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
BLOC1S4Q9NUP1 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
BLOC1S4Q9NUP1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
BLOC1S4Q9NUP1 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
BLOC1S4Q9NUP1 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
BLOC1S4Q9NUP1 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC23.51■■□□□ 1.35
BLOC1S4Q9NUP1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC23.51■■□□□ 1.35
BLOC1S4Q9NUP1 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.51■■□□□ 1.35
BLOC1S4Q9NUP1 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC23.51■■□□□ 1.35
BLOC1S4Q9NUP1 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
BLOC1S4Q9NUP1 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC23.51■■□□□ 1.35
BLOC1S4Q9NUP1 AC004854.2-201ENST00000608450 1441 ntBASIC23.5■■□□□ 1.35
BLOC1S4Q9NUP1 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
BLOC1S4Q9NUP1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.5■■□□□ 1.35
BLOC1S4Q9NUP1 AC061975.6-201ENST00000579045 1553 ntBASIC23.5■■□□□ 1.35
BLOC1S4Q9NUP1 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
BLOC1S4Q9NUP1 AC138907.5-202ENST00000569484 235 ntBASIC23.5■■□□□ 1.35
BLOC1S4Q9NUP1 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.5■■□□□ 1.35
BLOC1S4Q9NUP1 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
BLOC1S4Q9NUP1 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
BLOC1S4Q9NUP1 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC23.5■■□□□ 1.35
BLOC1S4Q9NUP1 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 AC104187.1-201ENST00000607510 612 ntBASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC23.49■■□□□ 1.35
BLOC1S4Q9NUP1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
BLOC1S4Q9NUP1 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.48■■□□□ 1.35
BLOC1S4Q9NUP1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
BLOC1S4Q9NUP1 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
BLOC1S4Q9NUP1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.48■■□□□ 1.35
BLOC1S4Q9NUP1 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
BLOC1S4Q9NUP1 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
BLOC1S4Q9NUP1 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
BLOC1S4Q9NUP1 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
BLOC1S4Q9NUP1 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
BLOC1S4Q9NUP1 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC23.48■■□□□ 1.35
BLOC1S4Q9NUP1 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
BLOC1S4Q9NUP1 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 COX20-201ENST00000366528 568 ntTSL 2 BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
BLOC1S4Q9NUP1 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms