Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LDB2O43679 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.19■□□□□ 0.98
LDB2O43679 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LDB2O43679 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.19■□□□□ 0.98
LDB2O43679 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB2O43679 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB2O43679 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LDB2O43679 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LDB2O43679 AC123595.1-201ENST00000440769 1046 ntBASIC21.18■□□□□ 0.98
LDB2O43679 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.18■□□□□ 0.98
LDB2O43679 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.18■□□□□ 0.98
LDB2O43679 LINC02228-203ENST00000641970 1355 ntBASIC21.18■□□□□ 0.98
LDB2O43679 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LDB2O43679 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB2O43679 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB2O43679 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.18■□□□□ 0.98
LDB2O43679 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.17■□□□□ 0.98
LDB2O43679 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
LDB2O43679 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB2O43679 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB2O43679 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.17■□□□□ 0.98
LDB2O43679 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB2O43679 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LDB2O43679 YBX1P1-201ENST00000445822 960 ntBASIC21.17■□□□□ 0.98
LDB2O43679 EEF1DP3-203ENST00000566025 782 ntBASIC21.17■□□□□ 0.98
LDB2O43679 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
LDB2O43679 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB2O43679 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LDB2O43679 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB2O43679 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB2O43679 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LDB2O43679 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.16■□□□□ 0.98
LDB2O43679 AL024507.2-201ENST00000606070 2574 ntBASIC21.16■□□□□ 0.98
LDB2O43679 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LDB2O43679 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LDB2O43679 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LDB2O43679 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.16■□□□□ 0.98
LDB2O43679 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.16■□□□□ 0.98
LDB2O43679 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.16■□□□□ 0.98
LDB2O43679 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.16■□□□□ 0.98
LDB2O43679 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.16■□□□□ 0.98
LDB2O43679 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
LDB2O43679 AC005229.4-201ENST00000610085 2198 ntBASIC21.16■□□□□ 0.98
LDB2O43679 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LDB2O43679 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.16■□□□□ 0.98
LDB2O43679 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
LDB2O43679 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LDB2O43679 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.15■□□□□ 0.98
LDB2O43679 AF106564.1-201ENST00000607058 2553 ntBASIC21.15■□□□□ 0.98
LDB2O43679 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.15■□□□□ 0.98
LDB2O43679 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LDB2O43679 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.15■□□□□ 0.98
LDB2O43679 TERF1P2-201ENST00000583350 1212 ntBASIC21.15■□□□□ 0.98
LDB2O43679 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.15■□□□□ 0.98
LDB2O43679 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
LDB2O43679 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LDB2O43679 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LDB2O43679 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LDB2O43679 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.14■□□□□ 0.98
LDB2O43679 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
LDB2O43679 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LDB2O43679 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LDB2O43679 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
LDB2O43679 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.14■□□□□ 0.98
LDB2O43679 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
LDB2O43679 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LDB2O43679 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.14■□□□□ 0.97
LDB2O43679 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
LDB2O43679 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
LDB2O43679 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.14■□□□□ 0.97
LDB2O43679 AC079140.4-201ENST00000507448 529 ntBASIC21.14■□□□□ 0.97
LDB2O43679 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.14■□□□□ 0.97
LDB2O43679 RARRES2P6-201ENST00000567333 442 ntBASIC21.14■□□□□ 0.97
LDB2O43679 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.14■□□□□ 0.97
LDB2O43679 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.14■□□□□ 0.97
LDB2O43679 AC053503.5-201ENST00000601508 636 ntBASIC21.14■□□□□ 0.97
LDB2O43679 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.14■□□□□ 0.97
LDB2O43679 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LDB2O43679 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
LDB2O43679 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LDB2O43679 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LDB2O43679 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LDB2O43679 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.13■□□□□ 0.97
LDB2O43679 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
LDB2O43679 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LDB2O43679 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
LDB2O43679 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LDB2O43679 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LDB2O43679 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LDB2O43679 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.13■□□□□ 0.97
LDB2O43679 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LDB2O43679 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.13■□□□□ 0.97
LDB2O43679 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.13■□□□□ 0.97
LDB2O43679 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LDB2O43679 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LDB2O43679 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LDB2O43679 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LDB2O43679 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LDB2O43679 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LDB2O43679 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms