Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 RDH54YBR073W 2877 nt3.82□□□□□ -1.8
RPN11P43588 POL1YNL102W 4407 nt3.82□□□□□ -1.8
RPN11P43588 ROK1YGL171W 1695 nt3.81□□□□□ -1.8
RPN11P43588 TIF4632YGL049C 2745 nt3.81□□□□□ -1.8
RPN11P43588 RPN3YER021W 1572 nt3.81□□□□□ -1.8
RPN11P43588 UBP6YFR010W 1500 nt3.81□□□□□ -1.8
RPN11P43588 ENA2YDR039C 3276 nt3.81□□□□□ -1.8
RPN11P43588 ENA1YDR040C 3276 nt3.81□□□□□ -1.8
RPN11P43588 ESC2YDR363W 1371 nt3.81□□□□□ -1.8
RPN11P43588 CDC40YDR364C 1368 nt3.81□□□□□ -1.8
RPN11P43588 YDR042CYDR042C 603 nt3.81□□□□□ -1.8
RPN11P43588 YLR257WYLR257W 966 nt3.81□□□□□ -1.8
RPN11P43588 YPT53YNL093W 663 nt3.81□□□□□ -1.8
RPN11P43588 RAS1YOR101W 930 nt3.81□□□□□ -1.8
RPN11P43588 RPS10AYOR293W 318 nt3.81□□□□□ -1.8
RPN11P43588 ROG1YGL144C 2058 nt3.81□□□□□ -1.8
RPN11P43588 MON1YGL124C 1935 nt3.81□□□□□ -1.8
RPN11P43588 YHR080CYHR080C 4038 nt3.81□□□□□ -1.8
RPN11P43588 MNN1YER001W 2289 nt3.81□□□□□ -1.8
RPN11P43588 YLR108CYLR108C 1458 nt3.8□□□□□ -1.8
RPN11P43588 TLC1TLC1 1301 nt3.8□□□□□ -1.8
RPN11P43588 SSB1YDL229W 1842 nt3.8□□□□□ -1.8
RPN11P43588 BSC2YDR275W 708 nt3.8□□□□□ -1.8
RPN11P43588 YGR026WYGR026W 837 nt3.8□□□□□ -1.8
RPN11P43588 tQ(UUG)BtQ(UUG)B 72 nt3.8□□□□□ -1.8
RPN11P43588 YHL044WYHL044W 708 nt3.8□□□□□ -1.8
RPN11P43588 GLG2YJL137C 1143 nt3.8□□□□□ -1.8
RPN11P43588 SWC7YLR385C 399 nt3.8□□□□□ -1.8
RPN11P43588 NBP1YLR457C 960 nt3.8□□□□□ -1.8
RPN11P43588 DLT1YMR126C 1029 nt3.8□□□□□ -1.8
RPN11P43588 HCM1YCR065W 1695 nt3.8□□□□□ -1.8
RPN11P43588 MIG1YGL035C 1515 nt3.8□□□□□ -1.8
RPN11P43588 ZDS1YMR273C 2748 nt3.79□□□□□ -1.8
RPN11P43588 OSH2YDL019C 3852 nt3.79□□□□□ -1.8
RPN11P43588 YDR261W-AYDR261W-A 1317 nt3.79□□□□□ -1.8
RPN11P43588 YPR148CYPR148C 1308 nt3.79□□□□□ -1.8
RPN11P43588 MET10YFR030W 3108 nt3.79□□□□□ -1.8
RPN11P43588 RPB9YGL070C 369 nt3.79□□□□□ -1.8
RPN11P43588 YGL132WYGL132W 336 nt3.79□□□□□ -1.8
RPN11P43588 THP2YHR167W 786 nt3.79□□□□□ -1.8
RPN11P43588 YKL131WYKL131W 522 nt3.79□□□□□ -1.8
RPN11P43588 YNR025CYNR025C 360 nt3.79□□□□□ -1.8
RPN11P43588 YPL276WYPL276W 438 nt3.79□□□□□ -1.8
RPN11P43588 YCL022CYCL022C 516 nt3.79□□□□□ -1.8
RPN11P43588 SPH1YLR313C 1593 nt3.79□□□□□ -1.8
RPN11P43588 SEC59YMR013C 1560 nt3.79□□□□□ -1.8
RPN11P43588 VPS64YDR200C 1815 nt3.79□□□□□ -1.8
RPN11P43588 GCN5YGR252W 1320 nt3.78□□□□□ -1.8
RPN11P43588 TAN1YGL232W 870 nt3.78□□□□□ -1.8
RPN11P43588 YBL055CYBL055C 1257 nt3.78□□□□□ -1.8
RPN11P43588 YOR238WYOR238W 912 nt3.78□□□□□ -1.8
RPN11P43588 TUM1YOR251C 915 nt3.78□□□□□ -1.8
RPN11P43588 YOR366WYOR366W 354 nt3.78□□□□□ -1.8
RPN11P43588 YBR242WYBR242W 717 nt3.78□□□□□ -1.8
RPN11P43588 MNR2YKL064W 2910 nt3.78□□□□□ -1.8
RPN11P43588 PRP3YDR473C 1410 nt3.78□□□□□ -1.8
RPN11P43588 NUP133YKR082W 3474 nt3.78□□□□□ -1.81
RPN11P43588 YBR238CYBR238C 2196 nt3.78□□□□□ -1.81
RPN11P43588 PPZ1YML016C 2079 nt3.77□□□□□ -1.81
RPN11P43588 SEN1YLR430W 6696 nt3.77□□□□□ -1.81
RPN11P43588 RPS13YDR064W 456 nt3.77□□□□□ -1.81
RPN11P43588 SPI1YER150W 447 nt3.77□□□□□ -1.81
RPN11P43588 YGR064WYGR064W 369 nt3.77□□□□□ -1.81
RPN11P43588 YGR114CYGR114C 390 nt3.77□□□□□ -1.81
RPN11P43588 PTI1YGR156W 1278 nt3.77□□□□□ -1.81
RPN11P43588 BIO2YGR286C 1128 nt3.77□□□□□ -1.81
RPN11P43588 AI4Q0065 1671 nt3.77□□□□□ -1.81
RPN11P43588 YGR117CYGR117C 1431 nt3.77□□□□□ -1.81
RPN11P43588 ECM21YBL101C 3354 nt3.77□□□□□ -1.81
RPN11P43588 RNA14YMR061W 2034 nt3.77□□□□□ -1.81
RPN11P43588 DNA2YHR164C 4569 nt3.76□□□□□ -1.81
RPN11P43588 MRPL11YDL202W 750 nt3.76□□□□□ -1.81
RPN11P43588 PDS1YDR113C 1122 nt3.76□□□□□ -1.81
RPN11P43588 GTR2YGR163W 1026 nt3.76□□□□□ -1.81
RPN11P43588 MPC3YGR243W 441 nt3.76□□□□□ -1.81
RPN11P43588 AIM22YJL046W 1230 nt3.76□□□□□ -1.81
RPN11P43588 YAL034C-BYAL034C-B 354 nt3.76□□□□□ -1.81
RPN11P43588 YKL123WYKL123W 381 nt3.76□□□□□ -1.81
RPN11P43588 NDL1YLR254C 570 nt3.76□□□□□ -1.81
RPN11P43588 YLR428CYLR428C 345 nt3.76□□□□□ -1.81
RPN11P43588 ECM13YBL043W 774 nt3.76□□□□□ -1.81
RPN11P43588 GRX7YBR014C 612 nt3.76□□□□□ -1.81
RPN11P43588 YOR152CYOR152C 771 nt3.76□□□□□ -1.81
RPN11P43588 RRG7YOR305W 729 nt3.76□□□□□ -1.81
RPN11P43588 FIG1YBR040W 897 nt3.76□□□□□ -1.81
RPN11P43588 BCK2YER167W 2556 nt3.76□□□□□ -1.81
RPN11P43588 ERT1YBR239C 1590 nt3.76□□□□□ -1.81
RPN11P43588 URA2YJL130C 6645 nt3.75□□□□□ -1.81
RPN11P43588 UTP25YIL091C 2166 nt3.75□□□□□ -1.81
RPN11P43588 ISW2YOR304W 3363 nt3.75□□□□□ -1.81
RPN11P43588 WBP1YEL002C 1293 nt3.75□□□□□ -1.81
RPN11P43588 YGL188CYGL188C 174 nt3.75□□□□□ -1.81
RPN11P43588 CTK2YJL006C 972 nt3.75□□□□□ -1.81
RPN11P43588 CCE1YKL011C 1062 nt3.75□□□□□ -1.81
RPN11P43588 RPC37YKR025W 849 nt3.75□□□□□ -1.81
RPN11P43588 SIL1YOL031C 1266 nt3.75□□□□□ -1.81
RPN11P43588 CUP9YPL177C 921 nt3.75□□□□□ -1.81
RPN11P43588 YPR108W-AYPR108W-A 213 nt3.75□□□□□ -1.81
RPN11P43588 snR43snR43 209 nt3.75□□□□□ -1.81
RPN11P43588 FLO5YHR211W 3228 nt3.75□□□□□ -1.81
Retrieved 100 of 7,029 protein–RNA pairs in 67.2 ms