Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LSM1O15116 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.42■□□□□ 0.86
LSM1O15116 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LSM1O15116 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.41■□□□□ 0.86
LSM1O15116 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.41■□□□□ 0.86
LSM1O15116 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.41■□□□□ 0.86
LSM1O15116 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.41■□□□□ 0.86
LSM1O15116 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.41■□□□□ 0.86
LSM1O15116 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.41■□□□□ 0.86
LSM1O15116 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
LSM1O15116 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.41■□□□□ 0.86
LSM1O15116 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM1O15116 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LSM1O15116 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.4■□□□□ 0.86
LSM1O15116 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
LSM1O15116 AP006587.3-201ENST00000525742 1516 ntBASIC20.4■□□□□ 0.86
LSM1O15116 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LSM1O15116 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
LSM1O15116 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
LSM1O15116 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.4■□□□□ 0.86
LSM1O15116 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LSM1O15116 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
LSM1O15116 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LSM1O15116 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LSM1O15116 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
LSM1O15116 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
LSM1O15116 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LSM1O15116 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LSM1O15116 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LSM1O15116 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.39■□□□□ 0.85
LSM1O15116 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LSM1O15116 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
LSM1O15116 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
LSM1O15116 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.39■□□□□ 0.85
LSM1O15116 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
LSM1O15116 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.39■□□□□ 0.85
LSM1O15116 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LSM1O15116 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
LSM1O15116 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.38■□□□□ 0.85
LSM1O15116 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LSM1O15116 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LSM1O15116 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LSM1O15116 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.38■□□□□ 0.85
LSM1O15116 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LSM1O15116 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
LSM1O15116 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LSM1O15116 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
LSM1O15116 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.38■□□□□ 0.85
LSM1O15116 AL136116.3-201ENST00000402907 1138 ntBASIC20.38■□□□□ 0.85
LSM1O15116 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LSM1O15116 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
LSM1O15116 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LSM1O15116 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.38■□□□□ 0.85
LSM1O15116 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LSM1O15116 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LSM1O15116 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
LSM1O15116 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.38■□□□□ 0.85
LSM1O15116 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
LSM1O15116 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
LSM1O15116 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LSM1O15116 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.37■□□□□ 0.85
LSM1O15116 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.37■□□□□ 0.85
LSM1O15116 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LSM1O15116 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.37■□□□□ 0.85
LSM1O15116 BX842568.3-201ENST00000418104 571 ntBASIC20.37■□□□□ 0.85
LSM1O15116 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.37■□□□□ 0.85
LSM1O15116 AC133561.4-201ENST00000566112 224 ntBASIC20.37■□□□□ 0.85
LSM1O15116 MIR4767-201ENST00000582827 78 ntBASIC20.37■□□□□ 0.85
LSM1O15116 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.37■□□□□ 0.85
LSM1O15116 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.37■□□□□ 0.85
LSM1O15116 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.37■□□□□ 0.85
LSM1O15116 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
LSM1O15116 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LSM1O15116 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.37■□□□□ 0.85
LSM1O15116 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LSM1O15116 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LSM1O15116 AC092667.1-201ENST00000434301 2586 ntBASIC20.37■□□□□ 0.85
LSM1O15116 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.37■□□□□ 0.85
LSM1O15116 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
LSM1O15116 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.37■□□□□ 0.85
LSM1O15116 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LSM1O15116 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LSM1O15116 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.36■□□□□ 0.85
LSM1O15116 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.36■□□□□ 0.85
LSM1O15116 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LSM1O15116 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LSM1O15116 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms