Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LDB2O43679 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
LDB2O43679 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.39■■□□□ 1.01
LDB2O43679 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.39■■□□□ 1.01
LDB2O43679 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.39■■□□□ 1.01
LDB2O43679 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LDB2O43679 AC007375.3-201ENST00000600936 2314 ntBASIC21.39■■□□□ 1.01
LDB2O43679 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
LDB2O43679 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LDB2O43679 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
LDB2O43679 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.38■■□□□ 1.01
LDB2O43679 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
LDB2O43679 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LDB2O43679 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.38■■□□□ 1.01
LDB2O43679 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LDB2O43679 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.38■■□□□ 1.01
LDB2O43679 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
LDB2O43679 IRS3P-201ENST00000223076 1006 ntBASIC21.38■■□□□ 1.01
LDB2O43679 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.38■■□□□ 1.01
LDB2O43679 AL354811.1-201ENST00000610286 706 ntBASIC21.38■■□□□ 1.01
LDB2O43679 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LDB2O43679 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LDB2O43679 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.37■■□□□ 1.01
LDB2O43679 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.37■■□□□ 1.01
LDB2O43679 AC055733.4-201ENST00000638462 1354 ntBASIC21.37■■□□□ 1.01
LDB2O43679 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
LDB2O43679 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LDB2O43679 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
LDB2O43679 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
LDB2O43679 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LDB2O43679 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.37■■□□□ 1.01
LDB2O43679 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LDB2O43679 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
LDB2O43679 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LDB2O43679 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.37■■□□□ 1.01
LDB2O43679 AL358852.1-201ENST00000623174 1268 ntBASIC21.37■■□□□ 1.01
LDB2O43679 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LDB2O43679 AC005224.4-201ENST00000583262 1652 ntBASIC21.37■■□□□ 1.01
LDB2O43679 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LDB2O43679 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LDB2O43679 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LDB2O43679 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
LDB2O43679 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.36■■□□□ 1.01
LDB2O43679 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
LDB2O43679 AC104564.3-201ENST00000582367 638 ntBASIC21.36■■□□□ 1.01
LDB2O43679 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.36■■□□□ 1.01
LDB2O43679 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.36■■□□□ 1.01
LDB2O43679 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.36■■□□□ 1.01
LDB2O43679 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
LDB2O43679 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
LDB2O43679 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LDB2O43679 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LDB2O43679 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
LDB2O43679 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LDB2O43679 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LDB2O43679 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.35■■□□□ 1.01
LDB2O43679 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.35■■□□□ 1.01
LDB2O43679 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.35■■□□□ 1.01
LDB2O43679 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.35■■□□□ 1.01
LDB2O43679 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
LDB2O43679 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LDB2O43679 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
LDB2O43679 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.35■■□□□ 1.01
LDB2O43679 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
LDB2O43679 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LDB2O43679 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LDB2O43679 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.34■■□□□ 1.01
LDB2O43679 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
LDB2O43679 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LDB2O43679 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.34■■□□□ 1.01
LDB2O43679 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
LDB2O43679 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
LDB2O43679 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LDB2O43679 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LDB2O43679 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
LDB2O43679 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.34■■□□□ 1.01
LDB2O43679 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
LDB2O43679 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.34■■□□□ 1.01
LDB2O43679 TPRG1LP1-201ENST00000598702 760 ntBASIC21.34■■□□□ 1.01
LDB2O43679 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.34■■□□□ 1.01
LDB2O43679 AC026310.3-201ENST00000625186 2373 ntBASIC21.34■■□□□ 1.01
LDB2O43679 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LDB2O43679 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LDB2O43679 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.34■■□□□ 1.01
LDB2O43679 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LDB2O43679 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LDB2O43679 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LDB2O43679 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.33■■□□□ 1.01
LDB2O43679 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LDB2O43679 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LDB2O43679 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LDB2O43679 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.33■■□□□ 1.01
LDB2O43679 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LDB2O43679 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
LDB2O43679 MIR6084-201ENST00000622012 110 ntBASIC21.33■■□□□ 1.01
LDB2O43679 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.33■■□□□ 1
LDB2O43679 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.33■■□□□ 1
LDB2O43679 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
LDB2O43679 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LDB2O43679 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms