Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.56■□□□□ 0.88
LSM1O15116 AC136469.2-201ENST00000623944 1028 ntBASIC20.56■□□□□ 0.88
LSM1O15116 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM1O15116 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.56■□□□□ 0.88
LSM1O15116 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LSM1O15116 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.56■□□□□ 0.88
LSM1O15116 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
LSM1O15116 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.55■□□□□ 0.88
LSM1O15116 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM1O15116 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LSM1O15116 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM1O15116 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.55■□□□□ 0.88
LSM1O15116 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LSM1O15116 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LSM1O15116 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM1O15116 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM1O15116 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LSM1O15116 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM1O15116 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM1O15116 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.55■□□□□ 0.88
LSM1O15116 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.55■□□□□ 0.88
LSM1O15116 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM1O15116 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM1O15116 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM1O15116 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM1O15116 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LSM1O15116 AC011298.3-201ENST00000615796 283 ntBASIC20.54■□□□□ 0.88
LSM1O15116 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LSM1O15116 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM1O15116 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM1O15116 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM1O15116 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
LSM1O15116 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM1O15116 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM1O15116 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM1O15116 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.53■□□□□ 0.88
LSM1O15116 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM1O15116 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM1O15116 SLC47A1P1-202ENST00000449666 945 ntBASIC20.53■□□□□ 0.88
LSM1O15116 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.53■□□□□ 0.88
LSM1O15116 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
LSM1O15116 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM1O15116 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM1O15116 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM1O15116 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM1O15116 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
LSM1O15116 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM1O15116 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM1O15116 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM1O15116 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LSM1O15116 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LSM1O15116 AC131281.2-201ENST00000520478 145 ntBASIC20.52■□□□□ 0.88
LSM1O15116 AP005435.1-201ENST00000529293 1178 ntBASIC20.52■□□□□ 0.88
LSM1O15116 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.52■□□□□ 0.88
LSM1O15116 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.52■□□□□ 0.88
LSM1O15116 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.52■□□□□ 0.88
LSM1O15116 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM1O15116 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM1O15116 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM1O15116 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.52■□□□□ 0.87
LSM1O15116 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
LSM1O15116 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LSM1O15116 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM1O15116 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM1O15116 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM1O15116 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.51■□□□□ 0.87
LSM1O15116 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.51■□□□□ 0.87
LSM1O15116 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.51■□□□□ 0.87
LSM1O15116 AL034346.1-201ENST00000568244 1277 ntBASIC20.51■□□□□ 0.87
LSM1O15116 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
LSM1O15116 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
LSM1O15116 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LSM1O15116 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LSM1O15116 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.5■□□□□ 0.87
LSM1O15116 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LSM1O15116 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
LSM1O15116 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.5■□□□□ 0.87
LSM1O15116 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.5■□□□□ 0.87
LSM1O15116 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LSM1O15116 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LSM1O15116 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LSM1O15116 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
LSM1O15116 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LSM1O15116 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
LSM1O15116 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LSM1O15116 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
LSM1O15116 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LSM1O15116 AP004607.7-201ENST00000527152 1677 ntBASIC20.49■□□□□ 0.87
LSM1O15116 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LSM1O15116 PKD1P6-201ENST00000343738 4769 ntBASIC20.49■□□□□ 0.87
LSM1O15116 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LSM1O15116 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.49■□□□□ 0.87
LSM1O15116 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.49■□□□□ 0.87
LSM1O15116 AL391422.3-201ENST00000603791 2761 ntBASIC20.49■□□□□ 0.87
LSM1O15116 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LSM1O15116 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.49■□□□□ 0.87
LSM1O15116 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.49■□□□□ 0.87
LSM1O15116 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.49■□□□□ 0.87
LSM1O15116 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LSM1O15116 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms