Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 KRT87P-202ENST00000534226 1464 ntBASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV40A0A0B4J280 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV40A0A0B4J280 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC17.55■□□□□ 0.4
TRAV40A0A0B4J280 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV40A0A0B4J280 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC17.55■□□□□ 0.4
TRAV40A0A0B4J280 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.55■□□□□ 0.4
TRAV40A0A0B4J280 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TRAV40A0A0B4J280 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV40A0A0B4J280 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV40A0A0B4J280 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV40A0A0B4J280 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 BID-214ENST00000617586 542 ntTSL 5 BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 AP004607.7-201ENST00000527152 1677 ntBASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 OR7E47P-201ENST00000546390 1422 ntBASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV40A0A0B4J280 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 NFE2L3P1-201ENST00000588207 1959 ntBASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 AC080038.1-201ENST00000611274 1154 ntBASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 DUSP8P5-201ENST00000422884 1815 ntBASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.53■□□□□ 0.4
TRAV40A0A0B4J280 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV40A0A0B4J280 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
TRAV40A0A0B4J280 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
TRAV40A0A0B4J280 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV40A0A0B4J280 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.52■□□□□ 0.4
TRAV40A0A0B4J280 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAV40A0A0B4J280 AC104187.1-201ENST00000607510 612 ntBASIC17.52■□□□□ 0.4
TRAV40A0A0B4J280 WWOX-218ENST00000627394 894 ntTSL 5 BASIC17.52■□□□□ 0.4
TRAV40A0A0B4J280 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
TRAV40A0A0B4J280 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV40A0A0B4J280 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV40A0A0B4J280 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV40A0A0B4J280 ESRRAP2-201ENST00000418437 1549 ntBASIC17.52■□□□□ 0.39
TRAV40A0A0B4J280 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV40A0A0B4J280 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV40A0A0B4J280 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 AC073111.5-205ENST00000641717 521 ntBASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms