Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.62■□□□□ 0.89
SDC1P18827 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
SDC1P18827 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDC1P18827 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.61■□□□□ 0.89
SDC1P18827 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SDC1P18827 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDC1P18827 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDC1P18827 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SDC1P18827 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDC1P18827 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.61■□□□□ 0.89
SDC1P18827 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SDC1P18827 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.61■□□□□ 0.89
SDC1P18827 AC010525.1-201ENST00000585559 441 ntBASIC20.61■□□□□ 0.89
SDC1P18827 MIR4466-201ENST00000606121 54 ntBASIC20.61■□□□□ 0.89
SDC1P18827 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.61■□□□□ 0.89
SDC1P18827 AC068587.7-201ENST00000641602 218 ntBASIC20.61■□□□□ 0.89
SDC1P18827 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDC1P18827 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDC1P18827 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDC1P18827 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SDC1P18827 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SDC1P18827 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.61■□□□□ 0.89
SDC1P18827 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SDC1P18827 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SDC1P18827 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SDC1P18827 AC244015.2-201ENST00000616358 1861 ntBASIC20.6■□□□□ 0.89
SDC1P18827 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.6■□□□□ 0.89
SDC1P18827 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
SDC1P18827 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.6■□□□□ 0.89
SDC1P18827 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
SDC1P18827 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SDC1P18827 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SDC1P18827 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.59■□□□□ 0.89
SDC1P18827 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SDC1P18827 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.59■□□□□ 0.89
SDC1P18827 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SDC1P18827 OR7E47P-201ENST00000546390 1422 ntBASIC20.59■□□□□ 0.89
SDC1P18827 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SDC1P18827 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SDC1P18827 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SDC1P18827 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
SDC1P18827 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SDC1P18827 SERBP1P1-201ENST00000396021 1160 ntBASIC20.58■□□□□ 0.89
SDC1P18827 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.58■□□□□ 0.89
SDC1P18827 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SDC1P18827 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDC1P18827 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SDC1P18827 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDC1P18827 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SDC1P18827 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDC1P18827 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.57■□□□□ 0.88
SDC1P18827 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDC1P18827 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.57■□□□□ 0.88
SDC1P18827 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SDC1P18827 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SDC1P18827 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.57■□□□□ 0.88
SDC1P18827 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDC1P18827 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDC1P18827 AC026471.6-201ENST00000622954 1905 ntBASIC20.57■□□□□ 0.88
SDC1P18827 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDC1P18827 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.57■□□□□ 0.88
SDC1P18827 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SDC1P18827 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SDC1P18827 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SDC1P18827 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SDC1P18827 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.56■□□□□ 0.88
SDC1P18827 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SDC1P18827 AC131281.2-201ENST00000520478 145 ntBASIC20.56■□□□□ 0.88
SDC1P18827 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.56■□□□□ 0.88
SDC1P18827 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SDC1P18827 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SDC1P18827 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SDC1P18827 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SDC1P18827 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SDC1P18827 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SDC1P18827 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SDC1P18827 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SDC1P18827 SYT6-210ENST00000641643 1587 ntBASIC20.55■□□□□ 0.88
SDC1P18827 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SDC1P18827 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.55■□□□□ 0.88
SDC1P18827 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SDC1P18827 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.55■□□□□ 0.88
SDC1P18827 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.55■□□□□ 0.88
SDC1P18827 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SDC1P18827 AC010141.3-201ENST00000456659 717 ntBASIC20.55■□□□□ 0.88
SDC1P18827 AL138724.1-201ENST00000606771 1088 ntBASIC20.55■□□□□ 0.88
SDC1P18827 AC087239.1-201ENST00000622671 572 ntBASIC20.55■□□□□ 0.88
SDC1P18827 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SDC1P18827 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.55■□□□□ 0.88
SDC1P18827 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.55■□□□□ 0.88
SDC1P18827 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SDC1P18827 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.55■□□□□ 0.88
SDC1P18827 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SDC1P18827 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SDC1P18827 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms