Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
LSM1O15116 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
LSM1O15116 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LSM1O15116 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LSM1O15116 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.82■□□□□ 0.92
LSM1O15116 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.82■□□□□ 0.92
LSM1O15116 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.82■□□□□ 0.92
LSM1O15116 AC099791.2-201ENST00000605725 427 ntBASIC20.82■□□□□ 0.92
LSM1O15116 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LSM1O15116 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LSM1O15116 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.82■□□□□ 0.92
LSM1O15116 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
LSM1O15116 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
LSM1O15116 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.82■□□□□ 0.92
LSM1O15116 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LSM1O15116 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.82■□□□□ 0.92
LSM1O15116 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LSM1O15116 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LSM1O15116 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LSM1O15116 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
LSM1O15116 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.81■□□□□ 0.92
LSM1O15116 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.81■□□□□ 0.92
LSM1O15116 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LSM1O15116 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LSM1O15116 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.81■□□□□ 0.92
LSM1O15116 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LSM1O15116 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LSM1O15116 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.81■□□□□ 0.92
LSM1O15116 AC244015.2-201ENST00000616358 1861 ntBASIC20.81■□□□□ 0.92
LSM1O15116 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
LSM1O15116 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LSM1O15116 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LSM1O15116 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LSM1O15116 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LSM1O15116 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LSM1O15116 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.8■□□□□ 0.92
LSM1O15116 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.8■□□□□ 0.92
LSM1O15116 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.8■□□□□ 0.92
LSM1O15116 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.8■□□□□ 0.92
LSM1O15116 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LSM1O15116 GUSBP5-201ENST00000418136 578 ntBASIC20.8■□□□□ 0.92
LSM1O15116 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LSM1O15116 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.8■□□□□ 0.92
LSM1O15116 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LSM1O15116 AL356740.2-201ENST00000601559 647 ntBASIC20.8■□□□□ 0.92
LSM1O15116 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.8■□□□□ 0.92
LSM1O15116 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
LSM1O15116 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LSM1O15116 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.8■□□□□ 0.92
LSM1O15116 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.8■□□□□ 0.92
LSM1O15116 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LSM1O15116 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LSM1O15116 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LSM1O15116 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
LSM1O15116 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
LSM1O15116 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LSM1O15116 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LSM1O15116 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LSM1O15116 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LSM1O15116 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LSM1O15116 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.79■□□□□ 0.92
LSM1O15116 MIR3621-201ENST00000580529 85 ntBASIC20.79■□□□□ 0.92
LSM1O15116 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.79■□□□□ 0.92
LSM1O15116 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LSM1O15116 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LSM1O15116 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.79■□□□□ 0.92
LSM1O15116 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.79■□□□□ 0.92
LSM1O15116 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LSM1O15116 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.79■□□□□ 0.92
LSM1O15116 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.79■□□□□ 0.92
LSM1O15116 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.79■□□□□ 0.92
LSM1O15116 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LSM1O15116 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LSM1O15116 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.78■□□□□ 0.92
LSM1O15116 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
LSM1O15116 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
LSM1O15116 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.78■□□□□ 0.92
LSM1O15116 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LSM1O15116 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LSM1O15116 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LSM1O15116 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LSM1O15116 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
LSM1O15116 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LSM1O15116 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LSM1O15116 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.78■□□□□ 0.92
LSM1O15116 AC079089.2-201ENST00000531211 1277 ntBASIC20.78■□□□□ 0.92
LSM1O15116 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LSM1O15116 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.78■□□□□ 0.92
LSM1O15116 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.78■□□□□ 0.92
LSM1O15116 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
LSM1O15116 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LSM1O15116 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LSM1O15116 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LSM1O15116 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LSM1O15116 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.77■□□□□ 0.92
LSM1O15116 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
LSM1O15116 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.77■□□□□ 0.92
LSM1O15116 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
LSM1O15116 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
LSM1O15116 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms