Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
BLOC1S4Q9NUP1 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
BLOC1S4Q9NUP1 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
BLOC1S4Q9NUP1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
BLOC1S4Q9NUP1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
BLOC1S4Q9NUP1 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
BLOC1S4Q9NUP1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BLOC1S4Q9NUP1 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BLOC1S4Q9NUP1 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC24.39■■□□□ 1.5
BLOC1S4Q9NUP1 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC24.39■■□□□ 1.5
BLOC1S4Q9NUP1 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
BLOC1S4Q9NUP1 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
BLOC1S4Q9NUP1 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC24.39■■□□□ 1.49
BLOC1S4Q9NUP1 AC106739.1-201ENST00000617035 715 ntBASIC24.39■■□□□ 1.49
BLOC1S4Q9NUP1 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
BLOC1S4Q9NUP1 AC079834.2-201ENST00000609776 1949 ntBASIC24.39■■□□□ 1.49
BLOC1S4Q9NUP1 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC24.39■■□□□ 1.49
BLOC1S4Q9NUP1 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
BLOC1S4Q9NUP1 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
BLOC1S4Q9NUP1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
BLOC1S4Q9NUP1 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
BLOC1S4Q9NUP1 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
BLOC1S4Q9NUP1 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
BLOC1S4Q9NUP1 RBM38-205ENST00000440234 686 ntTSL 2 BASIC24.38■■□□□ 1.49
BLOC1S4Q9NUP1 PBX2P1-201ENST00000493219 1291 ntBASIC24.38■■□□□ 1.49
BLOC1S4Q9NUP1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC24.38■■□□□ 1.49
BLOC1S4Q9NUP1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC24.38■■□□□ 1.49
BLOC1S4Q9NUP1 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC24.38■■□□□ 1.49
BLOC1S4Q9NUP1 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
BLOC1S4Q9NUP1 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
BLOC1S4Q9NUP1 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 BX842568.3-201ENST00000418104 571 ntBASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
BLOC1S4Q9NUP1 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 STK25-234ENST00000535007 2459 ntTSL 2 BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 AL031432.3-201ENST00000607698 485 ntBASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 AC068587.7-201ENST00000641602 218 ntBASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC24.35■■□□□ 1.49
BLOC1S4Q9NUP1 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC24.34■■□□□ 1.49
BLOC1S4Q9NUP1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
BLOC1S4Q9NUP1 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
BLOC1S4Q9NUP1 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
BLOC1S4Q9NUP1 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
BLOC1S4Q9NUP1 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC24.34■■□□□ 1.49
BLOC1S4Q9NUP1 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
BLOC1S4Q9NUP1 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
BLOC1S4Q9NUP1 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC24.34■■□□□ 1.49
BLOC1S4Q9NUP1 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC24.34■■□□□ 1.49
BLOC1S4Q9NUP1 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
BLOC1S4Q9NUP1 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC24.33■■□□□ 1.49
BLOC1S4Q9NUP1 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
BLOC1S4Q9NUP1 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC24.33■■□□□ 1.49
BLOC1S4Q9NUP1 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
BLOC1S4Q9NUP1 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC24.33■■□□□ 1.49
BLOC1S4Q9NUP1 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC24.33■■□□□ 1.49
BLOC1S4Q9NUP1 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
BLOC1S4Q9NUP1 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms