Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 AC131212.1-201ENST00000613771 668 ntBASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF540Q8NDQ6 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF540Q8NDQ6 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF540Q8NDQ6 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF540Q8NDQ6 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF540Q8NDQ6 KRT18P24-201ENST00000344739 1156 ntBASIC20.11■□□□□ 0.81
ZNF540Q8NDQ6 BX664725.1-201ENST00000438252 379 ntBASIC20.11■□□□□ 0.81
ZNF540Q8NDQ6 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.11■□□□□ 0.81
ZNF540Q8NDQ6 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF540Q8NDQ6 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF540Q8NDQ6 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
ZNF540Q8NDQ6 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.1■□□□□ 0.81
ZNF540Q8NDQ6 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZNF540Q8NDQ6 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZNF540Q8NDQ6 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZNF540Q8NDQ6 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZNF540Q8NDQ6 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZNF540Q8NDQ6 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.1■□□□□ 0.81
ZNF540Q8NDQ6 AC087742.1-201ENST00000575880 1738 ntBASIC20.1■□□□□ 0.81
ZNF540Q8NDQ6 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZNF540Q8NDQ6 AC005229.4-201ENST00000610085 2198 ntBASIC20.1■□□□□ 0.81
ZNF540Q8NDQ6 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZNF540Q8NDQ6 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.09■□□□□ 0.81
ZNF540Q8NDQ6 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ZNF540Q8NDQ6 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZNF540Q8NDQ6 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZNF540Q8NDQ6 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZNF540Q8NDQ6 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.09■□□□□ 0.81
ZNF540Q8NDQ6 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
ZNF540Q8NDQ6 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.09■□□□□ 0.81
ZNF540Q8NDQ6 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 AC010542.4-201ENST00000563151 1910 ntBASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 THA1P-201ENST00000590384 1145 ntBASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.08■□□□□ 0.81
ZNF540Q8NDQ6 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.08■□□□□ 0.8
ZNF540Q8NDQ6 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
ZNF540Q8NDQ6 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ZNF540Q8NDQ6 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.07■□□□□ 0.8
ZNF540Q8NDQ6 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF540Q8NDQ6 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms